Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FD987_RS06090 Genome accession   NZ_CP040239
Coordinates   1193625..1194119 (+) Length   164 a.a.
NCBI ID   WP_002786475.1    Uniprot ID   -
Organism   Campylobacter coli strain S9     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1188625..1199119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD987_RS06075 (FD987_06075) - 1190003..1191184 (-) 1182 WP_002786473.1 metal-dependent hydrolase -
  FD987_RS06080 (FD987_06080) - 1191193..1192092 (-) 900 WP_002777349.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  FD987_RS06085 (FD987_06085) gatB 1192092..1193510 (-) 1419 WP_002786474.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  FD987_RS06090 (FD987_06090) luxS 1193625..1194119 (+) 495 WP_002786475.1 S-ribosylhomocysteine lyase Regulator
  FD987_RS06100 (FD987_06100) - 1194435..1195427 (+) 993 WP_038853027.1 isopenicillin N synthase family oxygenase -
  FD987_RS06105 (FD987_06105) - 1195441..1196211 (+) 771 WP_002781303.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  FD987_RS06110 (FD987_06110) metE 1196234..1198498 (+) 2265 WP_002788129.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18331.19 Da        Isoelectric Point: 5.0135

>NTDB_id=320644 FD987_RS06090 WP_002786475.1 1193625..1194119(+) (luxS) [Campylobacter coli strain S9]
MPLLDSFKVDHTKMPAPAVRLAKTMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSDLVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEASMKDILNVSDQSQIPELNIYQCGTCAMHSLDEAKEIAQKVLNSTIGIMNNEELK
LENI

Nucleotide


Download         Length: 495 bp        

>NTDB_id=320644 FD987_RS06090 WP_002786475.1 1193625..1194119(+) (luxS) [Campylobacter coli strain S9]
ATGCCATTACTTGATAGTTTTAAAGTAGATCATACCAAAATGCCAGCACCCGCTGTGCGTTTAGCTAAAACAATGAAGAC
ACCAAAAGGCGATGATATTAGCGTATTTGACTTGCGTTTTTGCATACCCAATAAAGACATCATGAGTGAAAAAGGTACGC
ATACACTAGAACACTTATTTGCAGGTTTTATGAGAGATCATTTAAATTCGGATTTGGTTGAAATCATCGACATTTCGCCT
ATGGGATGTCGCACAGGTTTTTATATGAGTTTAATTGGCACACCTGATGAAAAAAGTGTTGCTAAAGCTTGGGAAGCCTC
AATGAAAGATATTTTAAATGTGAGCGATCAAAGTCAAATTCCTGAACTCAATATCTATCAATGTGGAACTTGTGCTATGC
ATTCTTTGGATGAAGCAAAAGAAATTGCACAAAAAGTTTTAAATTCTACCATAGGCATAATGAACAACGAAGAATTAAAA
CTTGAAAATATCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

71.429

98.171

0.701

Multiple sequence alignment