Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   D9842_RS24535 Genome accession   NZ_CP033043
Coordinates   5015032..5015985 (+) Length   317 a.a.
NCBI ID   WP_121664720.1    Uniprot ID   -
Organism   Metabacillus litoralis strain Bac94     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 5010032..5020985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9842_RS24500 - 5010827..5011090 (+) 264 WP_121664714.1 hypothetical protein -
  D9842_RS24510 - 5011663..5012472 (-) 810 WP_121664716.1 undecaprenyl-diphosphate phosphatase -
  D9842_RS24515 - 5012611..5012790 (+) 180 WP_098798716.1 YjzC family protein -
  D9842_RS24520 - 5012860..5013051 (-) 192 WP_121664717.1 DUF2929 family protein -
  D9842_RS24525 - 5013310..5014044 (+) 735 WP_121664718.1 hypothetical protein -
  D9842_RS24530 - 5014168..5014959 (+) 792 WP_121664719.1 NAD(P)-dependent oxidoreductase -
  D9842_RS24535 med 5015032..5015985 (+) 954 WP_121664720.1 BMP family ABC transporter substrate-binding protein Regulator
  D9842_RS24540 comZ 5016055..5016237 (+) 183 WP_098798711.1 ComZ family protein Regulator
  D9842_RS24545 - 5016273..5016584 (-) 312 WP_121664721.1 hypothetical protein -
  D9842_RS24550 - 5016801..5017733 (+) 933 WP_121664722.1 beta-ketoacyl-ACP synthase III -
  D9842_RS24555 fabF 5017839..5019080 (+) 1242 WP_121664723.1 beta-ketoacyl-ACP synthase II -
  D9842_RS24560 - 5019204..5019971 (+) 768 WP_121664724.1 DUF2268 domain-containing protein -
  D9842_RS24565 - 5020142..5020894 (+) 753 WP_098798706.1 YjbA family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35126.48 Da        Isoelectric Point: 3.9165

>NTDB_id=320643 D9842_RS24535 WP_121664720.1 5015032..5015985(+) (med) [Metabacillus litoralis strain Bac94]
MYIKFGLVLILLFSLFGCGQPVASGKLEKVGLLVPDTIDDKVWGTKGYKGLLKIQSELGVDVFYKEGMNDEFSIRSAIDE
FQEKDVNLIFGHGSEYAAFFNTICKDYPDIHFVLFNGEASGENVTSLNFESHAMGFFGGMVAGEMTNNDKVGVLAAFEWQ
PEIDGFFEGAYFQNENVNVDIQYVQDWNDVTTAMTLLDAMIAEGVDIVYVAGDGYNISVIERLKEEGLYAIGFVSDQSDL
GKGTVLTSTVQHVDVLYELVAKSFDSGELESGELFYDFQDGVISLGKFSPLVEKNFQTDLQESIEEYKESGLLPNQL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=320643 D9842_RS24535 WP_121664720.1 5015032..5015985(+) (med) [Metabacillus litoralis strain Bac94]
ATGTACATAAAGTTTGGTTTAGTCCTTATCCTTCTTTTTTCACTTTTTGGTTGTGGACAACCCGTAGCTTCAGGAAAACT
GGAGAAAGTAGGTTTACTTGTACCCGATACAATAGATGATAAAGTATGGGGAACAAAAGGGTACAAGGGGCTGCTGAAGA
TTCAGTCTGAACTAGGCGTGGATGTTTTTTATAAAGAAGGAATGAATGATGAATTTAGTATTCGTTCTGCTATTGACGAA
TTTCAAGAAAAGGATGTTAATCTGATTTTTGGTCATGGTAGTGAATATGCTGCTTTTTTCAATACCATTTGTAAAGATTA
TCCTGATATTCATTTCGTTCTATTCAATGGGGAAGCTTCTGGAGAAAATGTCACAAGCTTAAACTTTGAATCACATGCAA
TGGGCTTTTTTGGAGGAATGGTTGCTGGTGAAATGACGAATAATGATAAGGTTGGTGTATTAGCCGCATTTGAATGGCAG
CCTGAAATTGATGGTTTTTTTGAAGGGGCATATTTCCAAAATGAAAATGTAAATGTTGATATTCAATATGTACAAGATTG
GAATGATGTCACGACAGCTATGACCCTGTTGGATGCAATGATTGCTGAAGGAGTAGACATTGTTTATGTTGCAGGAGATG
GTTATAATATTTCCGTCATTGAGCGTCTAAAGGAAGAGGGCTTGTATGCAATTGGATTTGTATCCGATCAATCTGATTTA
GGGAAAGGAACAGTTCTCACAAGTACAGTTCAACATGTGGATGTCTTATATGAGCTTGTTGCAAAAAGTTTTGATAGCGG
AGAACTAGAAAGTGGAGAATTATTTTATGATTTCCAAGATGGTGTTATTTCACTGGGGAAATTTAGCCCCTTAGTGGAAA
AAAACTTTCAAACAGATCTTCAAGAATCTATTGAGGAATACAAGGAAAGTGGGCTCTTACCTAATCAATTGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(28-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

52.866

99.054

0.524

Multiple sequence alignment