Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   D9842_RS17955 Genome accession   NZ_CP033043
Coordinates   3663476..3664105 (+) Length   209 a.a.
NCBI ID   WP_121663692.1    Uniprot ID   -
Organism   Metabacillus litoralis strain Bac94     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3658476..3669105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9842_RS17930 - 3659114..3659365 (+) 252 WP_121663687.1 DUF3006 domain-containing protein -
  D9842_RS17935 - 3659562..3661268 (-) 1707 WP_121663688.1 methyl-accepting chemotaxis protein -
  D9842_RS17940 - 3661407..3662246 (-) 840 WP_121663689.1 trans-aconitate 2-methyltransferase -
  D9842_RS17945 - 3662472..3662672 (+) 201 WP_162987488.1 Spo0E family sporulation regulatory protein-aspartic acid phosphatase -
  D9842_RS17950 - 3662795..3663223 (-) 429 WP_121663691.1 hypothetical protein -
  D9842_RS17955 comA 3663476..3664105 (+) 630 WP_121663692.1 LuxR C-terminal-related transcriptional regulator Regulator
  D9842_RS17960 - 3664152..3666431 (-) 2280 WP_121663693.1 ATP-binding protein -
  D9842_RS26020 - 3666475..3666648 (-) 174 WP_162987489.1 hypothetical protein -
  D9842_RS26025 - 3666665..3666826 (-) 162 WP_162987490.1 hypothetical protein -
  D9842_RS26030 - 3667082..3667237 (-) 156 WP_162987491.1 hypothetical protein -
  D9842_RS17965 - 3667393..3668286 (-) 894 WP_121663694.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23515.15 Da        Isoelectric Point: 4.9804

>NTDB_id=320622 D9842_RS17955 WP_121663692.1 3663476..3664105(+) (comA) [Metabacillus litoralis strain Bac94]
MVNVLVVDDHIAVTEGTKAILETCNDIFVDTLSPPFSIDLIKDKDYAKYDVILMDINLGLDQNGIEVSKLILKDQPNCKI
IIYTGYDIEDYFLEAVKNGIYGAINKNTTKQSIVTYIHHVLNGEIVMSLELCKRSLKTSAKPPREKVGYTERERKILELL
GEGLTNQEIADRIYVSKRTVEYSITEIFNKLNVSSRAEAVLIAKSEGLL

Nucleotide


Download         Length: 630 bp        

>NTDB_id=320622 D9842_RS17955 WP_121663692.1 3663476..3664105(+) (comA) [Metabacillus litoralis strain Bac94]
ATGGTTAATGTATTAGTTGTCGATGATCATATCGCAGTAACTGAAGGAACAAAGGCTATTTTAGAAACGTGTAATGATAT
CTTTGTTGATACTTTGTCGCCCCCTTTTTCTATTGATTTGATTAAGGACAAAGATTATGCAAAATACGATGTTATTTTAA
TGGATATTAATTTAGGTTTGGATCAAAACGGAATTGAAGTGTCTAAACTTATTCTGAAGGACCAGCCTAATTGCAAAATC
ATTATTTATACGGGATATGACATTGAGGATTATTTTTTAGAGGCTGTCAAGAATGGGATTTACGGAGCAATAAACAAAAA
CACAACAAAACAAAGTATCGTTACTTATATTCATCATGTTCTTAACGGGGAAATTGTGATGTCATTAGAGCTTTGCAAAA
GATCTCTAAAGACTTCGGCAAAGCCACCAAGAGAGAAAGTTGGCTACACGGAGCGTGAGCGAAAAATCCTAGAATTATTA
GGCGAAGGTCTAACAAACCAGGAGATTGCAGATAGAATTTACGTAAGTAAACGAACCGTTGAGTATTCCATCACTGAGAT
ATTCAATAAACTGAACGTATCATCACGTGCAGAAGCCGTTTTAATCGCAAAATCTGAAGGACTGTTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(150-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

54.206

100

0.555

Multiple sequence alignment