Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   D9842_RS11940 Genome accession   NZ_CP033043
Coordinates   2401943..2403643 (-) Length   566 a.a.
NCBI ID   WP_121662727.1    Uniprot ID   -
Organism   Metabacillus litoralis strain Bac94     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2396943..2408643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9842_RS11910 - 2397337..2397480 (+) 144 WP_121662721.1 YycC family protein -
  D9842_RS11915 - 2397696..2398670 (+) 975 WP_121662722.1 ketoacyl-ACP synthase III -
  D9842_RS11920 - 2398763..2399269 (+) 507 WP_162987410.1 hypothetical protein -
  D9842_RS11925 spo0A 2399336..2400127 (-) 792 WP_121662724.1 sporulation transcription factor Spo0A -
  D9842_RS11935 spoIVB 2400433..2401728 (-) 1296 WP_121662726.1 SpoIVB peptidase -
  D9842_RS11940 recN 2401943..2403643 (-) 1701 WP_121662727.1 DNA repair protein RecN Machinery gene
  D9842_RS11945 ahrC 2403694..2404143 (-) 450 WP_121662728.1 transcriptional regulator AhrC/ArgR -
  D9842_RS11950 - 2404373..2405221 (-) 849 WP_121662729.1 TlyA family RNA methyltransferase -
  D9842_RS11955 dxs 2405218..2407119 (-) 1902 WP_121662730.1 1-deoxy-D-xylulose-5-phosphate synthase -
  D9842_RS11965 - 2407418..2408302 (-) 885 WP_257536035.1 polyprenyl synthetase family protein -
  D9842_RS11970 - 2408299..2408553 (-) 255 WP_098796035.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 63977.63 Da        Isoelectric Point: 4.7974

>NTDB_id=320603 D9842_RS11940 WP_121662727.1 2401943..2403643(-) (recN) [Metabacillus litoralis strain Bac94]
MLAELSIKNFAIIESLTVSFERGLTVLTGETGAGKSIIIDAIHLLAGARGSSEFVRYGEKRAELEALFLLDDTNHPVYLK
CEEFGIDVSDGMIILRRDMSSTGKSICRINGKLVTIAVLREVGQLLVDIHGQHDNQELMNEENHLSLLDQYGGQEVKDAL
EAYLDVYRHYDGLKKKITQLSENEQEMAHRLDLLQFQLDEIEKAELQPKEDELLQEEKNQISNYEKIYDALQNGYNSLHG
EQKGLDWIGLAMSQLENVGQINATLKELSETVSNAFYMLEDISYQLRNELESLEFDPGRLNYVEGRLNEINTLKRKYGQS
VEEILTYSAKIEEEIDTIQNKDSHITKLQKELQSITEDLSIEAKNLSMIRQKHAKMLIEEIHQELKELYMEKTSFDVNMK
EKRNNVNEIKYTSTGAEEIEFYISTNPGEPLKPLNKTASGGELSRIMLAMKSIFSQHQGITSIIFDEVDTGVSGRVAQAI
AEKIYRVSNGSQVLCITHLPQVAAMADTHLYIAKETKSGRTKTSVKPLVEDEKVKEIGRMIAGVEVTELSKEHARELLLL
ASSSKR

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=320603 D9842_RS11940 WP_121662727.1 2401943..2403643(-) (recN) [Metabacillus litoralis strain Bac94]
TTGTTAGCGGAATTATCAATAAAAAACTTTGCGATTATTGAATCTTTAACAGTTTCATTTGAGAGAGGACTAACTGTATT
AACTGGTGAAACCGGGGCTGGAAAGTCAATCATCATTGATGCCATTCATTTATTAGCAGGAGCAAGAGGATCTTCGGAAT
TTGTTCGGTATGGAGAAAAACGGGCAGAATTAGAGGCGCTATTTTTATTAGATGATACGAATCATCCTGTTTATCTCAAA
TGTGAAGAGTTTGGAATTGATGTTAGTGATGGAATGATTATTCTTAGAAGAGATATGTCTTCAACAGGTAAAAGTATTTG
CCGGATAAACGGGAAGTTAGTAACAATTGCTGTTTTAAGAGAAGTTGGTCAGCTTTTGGTTGATATTCATGGGCAGCATG
ATAATCAAGAGCTTATGAACGAGGAAAATCATCTATCATTGCTGGATCAATATGGTGGGCAAGAAGTAAAGGATGCATTA
GAAGCCTATTTAGATGTATACCGACATTATGATGGCTTAAAAAAGAAAATTACCCAGCTTTCCGAAAATGAACAGGAAAT
GGCTCACCGGCTTGATTTGCTTCAATTTCAATTAGATGAAATAGAAAAGGCAGAGCTACAGCCAAAAGAGGACGAGCTAT
TACAAGAAGAGAAAAATCAAATATCGAACTATGAAAAGATATATGATGCACTGCAAAACGGTTATAACTCACTTCATGGC
GAACAAAAAGGGTTAGATTGGATAGGTCTTGCCATGAGTCAGCTTGAAAATGTGGGCCAAATTAATGCTACTTTAAAGGA
ACTTTCAGAGACGGTTTCAAACGCTTTTTATATGTTGGAAGACATTTCGTATCAGCTACGAAATGAATTGGAATCTCTAG
AATTTGATCCTGGACGACTGAATTACGTTGAGGGTCGATTGAATGAAATTAACACTTTAAAGAGAAAATATGGTCAATCA
GTTGAAGAGATTTTGACTTATTCAGCTAAGATTGAAGAGGAAATCGATACGATACAAAATAAAGATAGCCATATAACTAA
ATTACAAAAAGAGCTTCAATCTATTACAGAAGATTTATCCATTGAGGCGAAAAACCTTTCAATGATTAGGCAGAAGCATG
CTAAGATGCTAATTGAGGAAATTCATCAAGAGCTTAAAGAGTTATATATGGAGAAAACAAGCTTTGATGTTAACATGAAA
GAAAAAAGAAACAATGTTAACGAGATAAAATATACTTCAACAGGTGCAGAAGAAATTGAATTTTATATTTCTACTAACCC
TGGTGAACCATTAAAACCATTAAATAAAACTGCATCAGGTGGAGAACTCTCACGGATCATGCTTGCAATGAAAAGTATCT
TTTCACAGCACCAAGGAATCACATCAATTATTTTTGATGAAGTTGATACCGGTGTTAGTGGGCGTGTTGCTCAAGCTATT
GCTGAAAAAATTTATCGAGTTTCTAACGGTTCTCAAGTTCTATGTATTACACATCTTCCACAGGTCGCTGCAATGGCTGA
TACACACTTATATATTGCAAAAGAAACAAAATCGGGTCGAACCAAAACAAGTGTTAAGCCATTGGTAGAAGACGAGAAAG
TTAAAGAAATCGGACGAATGATTGCTGGGGTAGAAGTAACGGAGCTTTCAAAGGAACATGCAAGAGAACTTCTGTTACTT
GCTTCTTCATCAAAACGTTAA

Domains

Predicted by InterproScan.

AAA ATPase domain (AAA_15)

(1-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

67.073

100

0.68

Multiple sequence alignment