Detailed information NTG0320492

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: D9M09_RS02630
• Genome accession: NZ_CP033019
• Coordinates: 553759..554628 (-)
• Length: 289 a.a.
• NCBI ID: WP_162995548.1
• Uniprot ID: -
• Organism: Janthinobacterium agaricidamnosum strain BHSEK
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 548759..559628

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9M09_RS02590 (D9M09_02590)	argJ	548762..550000 (+)	1239	WP_070290173.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
D9M09_RS02595 (D9M09_02595)	-	549997..550878 (+)	882	WP_121668507.1	ATP-binding protein	-
D9M09_RS02600 (D9M09_02600)	-	550875..551297 (+)	423	WP_121668508.1	NUDIX domain-containing protein	-
D9M09_RS02605 (D9M09_02605)	-	551419..551628 (+)	210	WP_070219361.1	hypothetical protein	-
D9M09_RS02610 (D9M09_02610)	-	551635..552057 (+)	423	WP_139143048.1	type II toxin-antitoxin system VapC family toxin	-
D9M09_RS02615 (D9M09_02615)	yacG	552061..552252 (-)	192	WP_034785391.1	DNA gyrase inhibitor YacG	-
D9M09_RS02620 (D9M09_02620)	zapD	552271..553026 (-)	756	WP_070219363.1	cell division protein ZapD	-
D9M09_RS02625 (D9M09_02625)	coaE	553089..553736 (-)	648	WP_121668509.1	dephospho-CoA kinase	-
D9M09_RS02630 (D9M09_02630)	pilD	553759..554628 (-)	870	WP_162995548.1	A24 family peptidase	Machinery gene
D9M09_RS02635 (D9M09_02635)	-	554914..555504 (-)	591	WP_070290185.1	DUF2867 domain-containing protein	-
D9M09_RS02640 (D9M09_02640)	-	555691..556080 (-)	390	WP_121668510.1	hypothetical protein	-
D9M09_RS02645 (D9M09_02645)	-	556229..557572 (-)	1344	WP_070219368.1	AarF/ABC1/UbiB kinase family protein	-
D9M09_RS02650 (D9M09_02650)	-	557569..558303 (-)	735	WP_070219369.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 30906.74 Da
• Isoelectric Point: 8.1280

>NTDB_id=320492 D9M09_RS02630 WP_162995548.1 553759..554628(-) (pilD) [Janthinobacterium agaricidamnosum strain BHSEK]
MLQDTLLFAAPGNLPVALVAALFGLIVGSFLNVVIHRVPKMMERDSANYVAEESGLPLPHTDRYNLMLPHSNCTACGHRI
TAKENIPVISYLLLRGKCSACKAPISVRYPLVELLTGALSALLIWHFGSGWTGLATLVFAWLLIAMTFIDADTQMLPDDL
TFPLLWAGLLVNINGTFVPLQDAVIGAAAGYLALWAVYWAFKLATGKEGMGYGDFKLLAALGAWLGWTMLPTIILLSSVV
GAVVGIGLIVFAKRGRDKPIPFGPYLAAAGLIALLYGTPLSRLTLGLTG

Nucleotide

• Length: 870 bp

>NTDB_id=320492 D9M09_RS02630 WP_162995548.1 553759..554628(-) (pilD) [Janthinobacterium agaricidamnosum strain BHSEK]
ATGCTGCAAGATACCCTGCTGTTCGCCGCGCCCGGCAATTTGCCCGTCGCCCTCGTCGCCGCCCTGTTCGGCCTGATCGT
CGGCAGCTTCCTCAACGTGGTGATCCACCGCGTGCCGAAAATGATGGAGCGCGACTCCGCTAATTACGTGGCGGAAGAAA
GCGGCTTGCCCTTGCCGCACACGGACCGCTACAACCTGATGCTGCCGCACTCAAACTGCACCGCTTGCGGCCACCGCATC
ACGGCCAAGGAAAACATCCCCGTCATCAGCTACCTGCTGCTGCGCGGCAAATGCAGCGCCTGCAAGGCGCCCATCTCCGT
GCGCTATCCGCTGGTGGAGCTGCTGACGGGCGCGCTGTCGGCCCTGTTGATCTGGCATTTCGGCAGCGGCTGGACGGGCC
TGGCCACGCTCGTGTTTGCCTGGCTGCTGATCGCCATGACCTTCATCGACGCCGACACGCAAATGCTGCCCGACGACCTG
ACCTTCCCCCTGCTGTGGGCCGGCTTGCTGGTCAACATCAACGGAACTTTCGTGCCGCTGCAGGACGCCGTCATCGGCGC
GGCCGCCGGTTATCTGGCCCTGTGGGCCGTGTACTGGGCCTTCAAGCTGGCGACAGGCAAGGAGGGAATGGGCTATGGTG
ACTTCAAATTGCTGGCGGCGCTCGGTGCGTGGCTGGGCTGGACCATGTTGCCGACGATCATATTGTTGTCGTCGGTGGTC
GGCGCCGTGGTCGGCATCGGCCTGATCGTGTTTGCCAAGCGGGGACGCGACAAACCGATTCCCTTCGGCCCCTACCTGGC
GGCGGCAGGCCTGATCGCGCTGCTGTACGGCACGCCCCTGTCGCGGCTCACGCTGGGCCTGACCGGCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.522	95.502	0.54
pilD	Vibrio campbellii strain DS40M4	56.489	90.657	0.512
pilD	Acinetobacter baumannii D1279779	47.387	99.308	0.471
pilD	Neisseria gonorrhoeae MS11	53.125	88.581	0.471
pilD	Acinetobacter nosocomialis M2	47.038	99.308	0.467