Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   D4G81_RS02615 Genome accession   NZ_CP032913
Coordinates   537854..538258 (+) Length   134 a.a.
NCBI ID   WP_139524113.1    Uniprot ID   -
Organism   Helicobacter pylori strain 5-A-EK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 532854..543258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4G81_RS02580 - 533027..533965 (-) 939 WP_139524109.1 tetraacyldisaccharide 4'-kinase -
  D4G81_RS02585 - 533962..534744 (-) 783 WP_139524110.1 NAD+ synthase -
  D4G81_RS02595 ilvC 534993..535985 (+) 993 WP_139524111.1 ketol-acid reductoisomerase -
  D4G81_RS02600 minD 536009..536815 (+) 807 WP_003014933.1 septum site-determining protein MinD -
  D4G81_RS02605 minE 536812..537045 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  D4G81_RS02610 dprA 537057..537857 (+) 801 WP_139524112.1 DNA-processing protein DprA Machinery gene
  D4G81_RS02615 dprB 537854..538258 (+) 405 WP_139524113.1 Holliday junction resolvase RuvX Machinery gene
  D4G81_RS02620 - 538387..538638 (+) 252 WP_139524114.1 SEL1-like repeat protein -
  D4G81_RS02625 - 538823..539161 (+) 339 WP_000699885.1 hypothetical protein -
  D4G81_RS02630 - 539145..539705 (+) 561 WP_139524115.1 hypothetical protein -
  D4G81_RS02635 - 539805..540686 (-) 882 WP_139524116.1 RluA family pseudouridine synthase -
  D4G81_RS02640 recJ 540686..542236 (-) 1551 WP_139524117.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15343.84 Da        Isoelectric Point: 8.7284

>NTDB_id=320358 D4G81_RS02615 WP_139524113.1 537854..538258(+) (dprB) [Helicobacter pylori strain 5-A-EK1]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=320358 D4G81_RS02615 WP_139524113.1 537854..538258(+) (dprB) [Helicobacter pylori strain 5-A-EK1]
ATGATTTTAGCATGCGATGTGGGGCTAAAACGCATTGGCATCGCTATGCTTTTAAACGGCGTTATCTTGCCCTTAGAAGC
GATTTTACGCCACAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACCCACGCCCGCATTGAGCATTTCATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.269

100

0.963

Multiple sequence alignment