Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | D4G81_RS00280 | Genome accession | NZ_CP032913 |
| Coordinates | 59824..60399 (+) | Length | 191 a.a. |
| NCBI ID | WP_139523833.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 5-A-EK1 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 54824..65399
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4G81_RS00255 | uvrD | 55515..57560 (+) | 2046 | WP_201737714.1 | DNA helicase UvrD | - |
| D4G81_RS00260 | flgA | 57557..58213 (+) | 657 | WP_139523831.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| D4G81_RS00265 | - | 58223..58786 (+) | 564 | WP_000780142.1 | UbiX family flavin prenyltransferase | - |
| D4G81_RS00270 | coaD | 58786..59259 (+) | 474 | WP_120905502.1 | pantetheine-phosphate adenylyltransferase | - |
| D4G81_RS00275 | tmk | 59261..59836 (+) | 576 | WP_139523832.1 | dTMP kinase | - |
| D4G81_RS00280 | comFC | 59824..60399 (+) | 576 | WP_139523833.1 | ComF family protein | Machinery gene |
| D4G81_RS00285 | - | 60433..62472 (+) | 2040 | WP_139523834.1 | N-6 DNA methylase | - |
| D4G81_RS07835 | - | 62469..63685 (+) | 1217 | Protein_55 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21368.89 Da Isoelectric Point: 8.8889
>NTDB_id=320346 D4G81_RS00280 WP_139523833.1 59824..60399(+) (comFC) [Helicobacter pylori strain 5-A-EK1]
MRCLTCLKLSFKPLCKNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRANNAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCKNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRANNAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=320346 D4G81_RS00280 WP_139523833.1 59824..60399(+) (comFC) [Helicobacter pylori strain 5-A-EK1]
ATGCGCTGTTTAACCTGTTTGAAGCTTTCCTTTAAGCCCCTTTGCAAAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGTTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAGAATCTTACAAGAACAAGGC
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGGGCTAATAATGCTGTTTCGTATGCGGGAAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACTCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCATTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGCTGTTTAACCTGTTTGAAGCTTTCCTTTAAGCCCCTTTGCAAAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGTTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAGAATCTTACAAGAACAAGGC
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGGGCTAATAATGCTGTTTCGTATGCGGGAAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACTCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCATTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.859 |
100 |
0.969 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.788 |
100 |
0.372 |