Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   D4H18_RS05820 Genome accession   NZ_CP032912
Coordinates   1181941..1182345 (-) Length   134 a.a.
NCBI ID   WP_139523057.1    Uniprot ID   -
Organism   Helicobacter pylori strain 13-A-EK8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1176941..1187345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H18_RS05770 - 1177616..1177951 (-) 336 WP_001862999.1 hypothetical protein -
  D4H18_RS05775 - 1177941..1178727 (-) 787 Protein_1101 hypothetical protein -
  D4H18_RS05780 - 1178727..1179108 (-) 382 Protein_1102 DUF1294 domain-containing protein -
  D4H18_RS08275 - 1179406..1179831 (-) 426 WP_236636009.1 hypothetical protein -
  D4H18_RS05800 - 1180093..1180659 (-) 567 WP_139523054.1 hypothetical protein -
  D4H18_RS05805 - 1180643..1180948 (-) 306 WP_139523055.1 hypothetical protein -
  D4H18_RS05815 - 1181134..1181809 (-) 676 Protein_1106 tetratricopeptide repeat protein -
  D4H18_RS05820 dprB 1181941..1182345 (-) 405 WP_139523057.1 Holliday junction resolvase RuvX Machinery gene
  D4H18_RS05825 dprA 1182342..1183142 (-) 801 WP_033590117.1 DNA-processing protein DprA Machinery gene
  D4H18_RS05830 minE 1183149..1183382 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  D4H18_RS05835 minD 1183379..1184185 (-) 807 WP_139523058.1 septum site-determining protein MinD -
  D4H18_RS05840 ilvC 1184204..1185196 (-) 993 WP_139523059.1 ketol-acid reductoisomerase -
  D4H18_RS05850 - 1185444..1186226 (+) 783 WP_139523060.1 NAD+ synthase -
  D4H18_RS05855 - 1186223..1187161 (+) 939 WP_139523061.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15224.61 Da        Isoelectric Point: 8.2822

>NTDB_id=320333 D4H18_RS05820 WP_139523057.1 1181941..1182345(-) (dprB) [Helicobacter pylori strain 13-A-EK8]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGKKNKRFAIKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=320333 D4H18_RS05820 WP_139523057.1 1181941..1182345(-) (dprB) [Helicobacter pylori strain 13-A-EK8]
GTGATTTTAGCATGCGATGTGGGGCTAAAACGCATTGGCATTGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCAGACACGAACGCACGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCCAGTATAGAAGCTTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGTT
CGCTATCAAAGACGGTCGGTTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

97.015

100

0.97

Multiple sequence alignment