Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | D4H18_RS00275 | Genome accession | NZ_CP032912 |
| Coordinates | 61753..62328 (+) | Length | 191 a.a. |
| NCBI ID | WP_139522392.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 13-A-EK8 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 56753..67328
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4H18_RS00250 | uvrD | 57442..59487 (+) | 2046 | WP_201737557.1 | DNA helicase UvrD | - |
| D4H18_RS00255 | flgA | 59484..60140 (+) | 657 | WP_139522390.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| D4H18_RS00260 | - | 60150..60713 (+) | 564 | WP_131129966.1 | UbiX family flavin prenyltransferase | - |
| D4H18_RS00265 | coaD | 60713..61186 (+) | 474 | WP_001169272.1 | pantetheine-phosphate adenylyltransferase | - |
| D4H18_RS00270 | tmk | 61190..61765 (+) | 576 | WP_139522391.1 | dTMP kinase | - |
| D4H18_RS00275 | comFC | 61753..62328 (+) | 576 | WP_139522392.1 | ComF family protein | Machinery gene |
| D4H18_RS00280 | - | 62361..64397 (+) | 2037 | WP_139522393.1 | N-6 DNA methylase | - |
| D4H18_RS00285 | - | 64394..65602 (+) | 1209 | WP_139522394.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21462.06 Da Isoelectric Point: 9.0978
>NTDB_id=320326 D4H18_RS00275 WP_139522392.1 61753..62328(+) (comFC) [Helicobacter pylori strain 13-A-EK8]
MRCLTCLKLSFKPLCPNCLNDLPLSLRIRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNVVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLRIRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNVVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=320326 D4H18_RS00275 WP_139522392.1 61753..62328(+) (comFC) [Helicobacter pylori strain 13-A-EK8]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATCTGCCCTTAAGCTTAAG
AATAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCTGGCAAAGAATTTGTGAAAATCCTGCAAGAACAGGGT
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCTTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGTTGTTTCGTATGCCGGGAAAAGCTTGG
AATTTCGCGCCAACAACCCACGGAATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATAGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATCTGCCCTTAAGCTTAAG
AATAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCTGGCAAAGAATTTGTGAAAATCCTGCAAGAACAGGGT
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCTTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGTTGTTTCGTATGCCGGGAAAAGCTTGG
AATTTCGCGCCAACAACCCACGGAATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATAGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.751 |
100 |
0.361 |