Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   D4H43_RS05785 Genome accession   NZ_CP032911
Coordinates   1182700..1183500 (-) Length   266 a.a.
NCBI ID   WP_139544312.1    Uniprot ID   -
Organism   Helicobacter pylori strain 19-A-EK3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1177700..1188500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H43_RS05755 recJ 1178228..1179778 (+) 1551 WP_139544306.1 single-stranded-DNA-specific exonuclease RecJ -
  D4H43_RS05760 - 1179778..1180659 (+) 882 WP_139544307.1 RluA family pseudouridine synthase -
  D4H43_RS05765 - 1180787..1181347 (-) 561 WP_139544308.1 hypothetical protein -
  D4H43_RS05770 - 1181331..1181636 (-) 306 WP_139544309.1 hypothetical protein -
  D4H43_RS05775 - 1181823..1182173 (-) 351 WP_139544310.1 tetratricopeptide repeat protein -
  D4H43_RS05780 dprB 1182299..1182703 (-) 405 WP_139544311.1 Holliday junction resolvase RuvX Machinery gene
  D4H43_RS05785 dprA 1182700..1183500 (-) 801 WP_139544312.1 DNA-processing protein DprA Machinery gene
  D4H43_RS05790 minE 1183507..1183740 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  D4H43_RS05795 minD 1183737..1184543 (-) 807 WP_139548819.1 septum site-determining protein MinD -
  D4H43_RS05800 ilvC 1184567..1185559 (-) 993 WP_139548820.1 ketol-acid reductoisomerase -
  D4H43_RS05810 - 1185808..1186590 (+) 783 WP_139548821.1 NAD+ synthase -
  D4H43_RS05815 - 1186587..1187525 (+) 939 WP_139544316.1 tetraacyldisaccharide 4'-kinase -
  D4H43_RS05820 pseH 1187458..1188000 (-) 543 WP_139544317.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29885.75 Da        Isoelectric Point: 7.2879

>NTDB_id=320310 D4H43_RS05785 WP_139544312.1 1182700..1183500(-) (dprA) [Helicobacter pylori strain 19-A-EK3]
MKSNFQYSVLENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDVVIIPQADLQSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMEDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHLVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=320310 D4H43_RS05785 WP_139544312.1 1182700..1183500(-) (dprA) [Helicobacter pylori strain 19-A-EK3]
ATGAAAAGTAATTTCCAATACAGCGTGCTAGAAAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAGCT
CTATTGTGTGGGCGATACAAAGCTTTTAGAAGCGCCTTTAAAAGTGGCTATCATCGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACCATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGAGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAAAAACCATCATGCTTTCGCCTTGCAGTTTGGATTTTATCTATCCTACGAA
CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTCATGCCCGTTAAAG
GCTCTTTTTTAGCCAGAAACCGCCTAGTGATCGCTTTAAGCGATGTAGTGATTATCCCCCAAGCGGATTTACAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCCCAAAAATACCAAAAGCCTTTATTTGTTTTACCCCAACGCCTGAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAATACCCTTTTAAAAGACT
ACCATTTAAAAGAAATGCCTGAAATGGAAGATGAATTTTTAGAATATTGTGCGAAAAACCCTAGCTATGAAGAAGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATCAAGCGCATCAATCATCTCGTGGTGTTAGCATG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(13-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

97.368

100

0.974
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.788

84.962

0.406

Multiple sequence alignment