Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | D4H43_RS00280 | Genome accession | NZ_CP032911 |
| Coordinates | 63598..64173 (+) | Length | 191 a.a. |
| NCBI ID | WP_139543661.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 19-A-EK3 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 58598..69173
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4H43_RS00255 | uvrD | 59286..61334 (+) | 2049 | WP_139543657.1 | DNA helicase UvrD | - |
| D4H43_RS00260 | flgA | 61331..61987 (+) | 657 | WP_139543658.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| D4H43_RS00265 | - | 61997..62560 (+) | 564 | WP_000780113.1 | UbiX family flavin prenyltransferase | - |
| D4H43_RS00270 | coaD | 62560..63033 (+) | 474 | WP_139543659.1 | pantetheine-phosphate adenylyltransferase | - |
| D4H43_RS00275 | tmk | 63035..63610 (+) | 576 | WP_139543660.1 | dTMP kinase | - |
| D4H43_RS00280 | comFC | 63598..64173 (+) | 576 | WP_139543661.1 | ComF family protein | Machinery gene |
| D4H43_RS00285 | - | 64208..66246 (+) | 2039 | Protein_55 | N-6 DNA methylase | - |
| D4H43_RS08410 | - | 66315..66848 (+) | 534 | WP_236633673.1 | restriction endonuclease subunit S | - |
| D4H43_RS08415 | - | 66876..67448 (+) | 573 | Protein_57 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21275.85 Da Isoelectric Point: 9.2849
>NTDB_id=320303 D4H43_RS00280 WP_139543661.1 63598..64173(+) (comFC) [Helicobacter pylori strain 19-A-EK3]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAVDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAVDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=320303 D4H43_RS00280 WP_139543661.1 63598..64173(+) (comFC) [Helicobacter pylori strain 19-A-EK3]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCCTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCGTTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCACACTTTGCGATCGCGCTTTG
TAGCGCAGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCCTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCGTTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCACACTTTGCGATCGCGCTTTG
TAGCGCAGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.859 |
100 |
0.969 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |