Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | D4I01_RS00280 | Genome accession | NZ_CP032909 |
| Coordinates | 59367..59942 (+) | Length | 191 a.a. |
| NCBI ID | WP_139542625.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 21-A-EK1 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 54367..64942
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4I01_RS00255 | uvrD | 55058..57103 (+) | 2046 | WP_201737916.1 | DNA helicase UvrD | - |
| D4I01_RS00260 | flgA | 57100..57756 (+) | 657 | WP_139542623.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| D4I01_RS00265 | - | 57766..58329 (+) | 564 | WP_000780142.1 | UbiX family flavin prenyltransferase | - |
| D4I01_RS00270 | coaD | 58329..58802 (+) | 474 | WP_024118156.1 | pantetheine-phosphate adenylyltransferase | - |
| D4I01_RS00275 | tmk | 58804..59379 (+) | 576 | WP_139542624.1 | dTMP kinase | - |
| D4I01_RS00280 | comFC | 59367..59942 (+) | 576 | WP_139542625.1 | ComF family protein | Machinery gene |
| D4I01_RS00285 | - | 59975..62014 (+) | 2040 | WP_139542626.1 | N-6 DNA methylase | - |
| D4I01_RS00290 | - | 62011..63237 (+) | 1227 | WP_139542627.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21470.12 Da Isoelectric Point: 9.4390
>NTDB_id=320263 D4I01_RS00280 WP_139542625.1 59367..59942(+) (comFC) [Helicobacter pylori strain 21-A-EK1]
MRCLTCLKLSFKPLCKNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRNFKFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
MRCLTCLKLSFKPLCKNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRNFKFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=320263 D4I01_RS00280 WP_139542625.1 59367..59942(+) (comFC) [Helicobacter pylori strain 21-A-EK1]
ATGCGTTGTTTAACTTGCTTGAAGCTTTCTTTTAAGCCCCTTTGCAAAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTACCCTTGCTTTCTCAAAAAGCTGGCAAAGAATTTGTGAAAATCCTGCAAGAACAAGGT
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTGAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCCACTAACGCCGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGAATTTTAAATTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGTACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCATTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGCTTGAAGCTTTCTTTTAAGCCCCTTTGCAAAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTACCCTTGCTTTCTCAAAAAGCTGGCAAAGAATTTGTGAAAATCCTGCAAGAACAAGGT
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTGAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCCACTAACGCCGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGAATTTTAAATTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGTACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCATTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.859 |
100 |
0.969 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.788 |
100 |
0.372 |