Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | D4I31_RS00275 | Genome accession | NZ_CP032908 |
| Coordinates | 62238..62813 (+) | Length | 191 a.a. |
| NCBI ID | WP_139533973.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 23-A-EK1 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 57238..67813
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4I31_RS00250 | uvrD | 57929..59974 (+) | 2046 | WP_201738138.1 | DNA helicase UvrD | - |
| D4I31_RS00255 | flgA | 59971..60627 (+) | 657 | WP_139533971.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| D4I31_RS00260 | - | 60637..61200 (+) | 564 | WP_000780111.1 | UbiX family flavin prenyltransferase | - |
| D4I31_RS00265 | coaD | 61200..61673 (+) | 474 | WP_001169242.1 | pantetheine-phosphate adenylyltransferase | - |
| D4I31_RS00270 | tmk | 61675..62250 (+) | 576 | WP_139533972.1 | dTMP kinase | - |
| D4I31_RS00275 | comFC | 62238..62813 (+) | 576 | WP_139533973.1 | ComF family protein | Machinery gene |
| D4I31_RS00280 | - | 62847..64886 (+) | 2040 | WP_139533974.1 | N-6 DNA methylase | - |
| D4I31_RS00285 | - | 64945..66102 (+) | 1158 | WP_236635754.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21381.97 Da Isoelectric Point: 9.0940
>NTDB_id=320242 D4I31_RS00275 WP_139533973.1 62238..62813(+) (comFC) [Helicobacter pylori strain 23-A-EK1]
MRCLTCLKLSFKPLCKNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAKFVKILQEQG
LNIPLYGVAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
MRCLTCLKLSFKPLCKNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAKFVKILQEQG
LNIPLYGVAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=320242 D4I31_RS00275 WP_139533973.1 62238..62813(+) (comFC) [Helicobacter pylori strain 23-A-EK1]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCAAAAATTGTTTGAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAGAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCAAAGTTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCGTCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTATGGGACTTTAAGAGCTACAAATACTATTTCGTATGCTGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTCTTGTTAGATGATATTATC
ACCACCGGCACCACCTTAAAAGAAGCTCTAAAATACCTTAAAACCCTAAACATCAAAACGCATTTTGCGATCGCGCTTTG
CAGCGCGGACGAATGA
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCAAAAATTGTTTGAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAGAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCAAAGTTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCGTCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTATGGGACTTTAAGAGCTACAAATACTATTTCGTATGCTGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTCTTGTTAGATGATATTATC
ACCACCGGCACCACCTTAAAAGAAGCTCTAAAATACCTTAAAACCCTAAACATCAAAACGCATTTTGCGATCGCGCTTTG
CAGCGCGGACGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.241 |
100 |
0.942 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |