Detailed information NTG0320238

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: FDZ90_RS11210
• Genome accession: NZ_CP040172
• Coordinates: 2287670..2290243 (-)
• Length: 857 a.a.
• NCBI ID: WP_001235051.1
• Uniprot ID: Q9KU18
• Organism: Vibrio cholerae strain VC1374
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2282670..2295243

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FDZ90_RS11210 (FDZ90_11550)	clpC	2287670..2290243 (-)	2574	WP_001235051.1	ATP-dependent chaperone ClpB	Regulator
FDZ90_RS11215 (FDZ90_11555)	pgeF	2290368..2291090 (-)	723	WP_000602844.1	peptidoglycan editing factor PgeF	-
FDZ90_RS11220 (FDZ90_11560)	rluD	2291093..2292067 (-)	975	WP_000941107.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
FDZ90_RS11225 (FDZ90_11565)	comL	2292222..2292947 (+)	726	WP_000877198.1	outer membrane protein assembly factor BamD	Machinery gene
FDZ90_RS11230 (FDZ90_11570)	hpf	2293349..2293675 (+)	327	WP_000700176.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
FDZ90_RS11235 (FDZ90_11575)	pheA	2293915..2295090 (+)	1176	WP_000130282.1	prephenate dehydratase	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 95827.76 Da
• Isoelectric Point: 5.3574

>NTDB_id=320238 FDZ90_RS11210 WP_001235051.1 2287670..2290243(-) (clpC) [Vibrio cholerae strain VC1374]
MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTMLNVDVMQLRSKLGEMLDRLPKVSGIGGD
VQLSSALGSLFNLCDKVAQKRQDAYISSEIYLLAAIEDKGPLGHLLKEFGLTEKKVSEAIEKIRGGQKVNDPNAEELRQA
LEKFTIDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSL
DMGALVAGAKYRGEFEERLKSVLNELAKEEGNIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYR
QYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASS
IRMQIDSKPEALDKLERKIIQLKIEQQALSNEHDEASEKRLAILNEELQEKERDYAELEEVWKAEKAALSGTQHIKAALE
QARMDLEVARRAGDLNRMSELQYGRIPELEKQLDLAAQAEMQEMTLLRNKVTDAEIAEVLSKQTGIPVSKMLEAEKEKLL
RMEDVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDSEDAMVRVDMSEFMEK
HSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSSRIQENFARLDYQGIKEQVMDVVSKHFRPEFLNRVDESVVFHPLGQEHIKSIASIQLARLRQRLAERDYQLEVDDEAL
DLIAHVGFDPVYGARPLKRAIQQNVENPLAKSILAGKFLPGSPILLSVKDGNIFASQ

Nucleotide

• Length: 2574 bp

>NTDB_id=320238 FDZ90_RS11210 WP_001235051.1 2287670..2290243(-) (clpC) [Vibrio cholerae strain VC1374]
ATGCGTCTTGACAGATTTACGAGCAAATTTCAGATCGCGATTTCCGATGCCCAGTCATTAGCGCTCGGCCGTGATCATCA
ATATATCGAACCTGTGCACCTGATGGTGGCTCTGCTGGATCAAAACGGCAGCCCGATCCGCCCATTACTCACCATGCTTA
ATGTGGATGTGATGCAACTGCGCTCCAAACTTGGCGAAATGCTCGATCGTTTACCCAAAGTCAGTGGTATTGGTGGTGAT
GTACAGCTCTCTTCGGCGCTTGGCTCGCTGTTTAATCTGTGTGATAAGGTTGCGCAAAAGCGTCAAGATGCCTACATCTC
CTCTGAAATCTATCTACTTGCTGCGATTGAGGACAAAGGGCCACTGGGTCACTTACTCAAAGAGTTTGGACTGACCGAGA
AAAAAGTCTCTGAAGCAATAGAGAAGATTCGTGGTGGACAAAAGGTTAATGACCCGAATGCGGAAGAGCTGCGTCAAGCG
TTGGAAAAATTCACCATCGATCTGACTGAACGCGCTGAGCAGGGCAAACTCGATCCTGTGATCGGTCGTGATGATGAAAT
TCGCCGCACCATTCAAGTGCTGCAACGCCGTACCAAGAACAATCCGGTGATCATCGGTGAACCCGGTGTGGGTAAAACTG
CGATTGTGGAAGGCTTGGCGCAGCGCATCATTAATAATGAAGTACCAGAAGGCCTGCGTGGACGGCGAGTGTTGTCTTTA
GATATGGGCGCGCTAGTGGCAGGGGCGAAATACCGCGGCGAATTTGAAGAGCGCTTGAAATCAGTACTCAATGAGCTAGC
GAAAGAAGAAGGCAATATCATCCTCTTCATTGATGAGCTGCACACCATGGTTGGTGCGGGGAAAGGCGAAGGCTCGATGG
ATGCCGGCAACATGCTCAAACCCGCTTTGGCGCGTGGAGAATTGCACTGTGTCGGCGCAACCACTTTAGATGAGTACCGC
CAATACATCGAAAAAGATCCAGCGTTAGAGCGCCGCTTCCAAAAAGTGTTGGTGGATGAGCCCACGGTGGAAGATACCAT
CGCCATCTTGCGTGGATTGAAAGAGCGTTATGAACTGCATCACCATGTCGAAATCACAGATCCAGCGATTGTGGCGGCAG
CGAGCCTATCGCATCGCTATATTTCCGATCGCCAGTTGCCTGATAAAGCGATCGATTTGATCGATGAAGCGGCTTCAAGC
ATCCGGATGCAGATTGACTCCAAACCAGAAGCTCTGGATAAGCTTGAGCGCAAAATCATCCAACTGAAAATCGAGCAGCA
AGCGCTCTCTAATGAGCACGATGAAGCCAGTGAAAAACGCTTGGCGATCTTAAATGAAGAGCTGCAAGAGAAAGAGCGTG
ATTACGCGGAGTTGGAAGAAGTGTGGAAAGCTGAAAAGGCGGCACTCTCCGGCACGCAACATATTAAAGCGGCACTTGAA
CAAGCGCGGATGGATCTGGAAGTCGCTCGCCGTGCGGGGGATTTGAACCGCATGTCAGAGCTGCAATATGGTCGCATTCC
AGAGCTAGAAAAGCAGCTTGATCTGGCTGCGCAAGCCGAAATGCAGGAAATGACTCTGCTACGTAATAAAGTGACGGATG
CAGAAATTGCCGAAGTGCTTTCAAAACAGACTGGCATTCCAGTATCAAAAATGCTCGAAGCTGAGAAAGAAAAGTTGCTG
CGCATGGAAGACGTGCTGCATAAACGCGTGATTGGTCAAAAAGAAGCGGTGGAAGTGGTCGCGAATGCGATCCGCCGCAG
TCGCGCAGGGCTTTCTGATCCAAATCGTCCGATTGGCTCCTTCTTATTCTTGGGGCCAACAGGGGTCGGTAAAACCGAGC
TGTGTAAAACCTTGGCTAACTTCCTGTTTGACAGTGAAGATGCCATGGTACGTGTGGATATGTCGGAATTTATGGAGAAA
CACTCGGTTGCTCGTTTAGTCGGTGCGCCTCCAGGTTATGTCGGCTATGAAGAAGGTGGCTACTTAACGGAAGCTGTACG
CCGTAAACCTTACTCGGTGATTTTGCTCGATGAAGTGGAAAAGGCGCACCCAGATGTCTTCAATATTCTGCTGCAAGTCT
TGGATGATGGCCGCTTGACGGACGGACAAGGGCGCACGGTCGATTTTCGAAATACCGTTGTGATCATGACCTCCAACTTG
GGTTCAAGCCGTATCCAAGAAAATTTTGCAAGGTTGGATTATCAAGGTATCAAAGAACAAGTGATGGACGTAGTCAGCAA
ACACTTCCGTCCTGAGTTCTTGAACCGAGTGGATGAAAGTGTGGTATTCCACCCATTAGGACAAGAGCATATCAAGTCGA
TCGCTTCTATTCAGTTGGCCCGCCTACGTCAACGTTTGGCAGAGCGAGATTACCAACTAGAGGTTGATGATGAGGCGCTG
GATCTGATTGCTCATGTCGGCTTCGATCCGGTTTATGGTGCTCGTCCACTGAAACGCGCGATTCAACAAAATGTGGAAAA
CCCACTGGCCAAATCGATTCTGGCTGGTAAGTTCCTGCCTGGTTCACCTATTTTACTATCGGTAAAAGACGGGAATATTT
TCGCAAGCCAGTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (596-759)

• AAA lid domain (AAA_lid_9) (342-442)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (766-843)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-335)

3D structure

• AlphaFold DB: Q9KU18

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.569	100	0.48
clpC	Lactococcus lactis subsp. cremoris KW2	47.33	80.863	0.383