Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   D4I62_RS02455 Genome accession   NZ_CP032907
Coordinates   503083..503487 (+) Length   134 a.a.
NCBI ID   WP_139533226.1    Uniprot ID   -
Organism   Helicobacter pylori strain 24-A-EK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 498083..508487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I62_RS02420 - 498261..499199 (-) 939 WP_139533222.1 tetraacyldisaccharide 4'-kinase -
  D4I62_RS02425 - 499196..499978 (-) 783 WP_139533223.1 NAD+ synthase -
  D4I62_RS02435 ilvC 500227..501219 (+) 993 WP_139533224.1 ketol-acid reductoisomerase -
  D4I62_RS02440 minD 501243..502049 (+) 807 WP_001019044.1 septum site-determining protein MinD -
  D4I62_RS02445 minE 502046..502279 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  D4I62_RS02450 dprA 502286..503086 (+) 801 WP_139533225.1 DNA-processing protein DprA Machinery gene
  D4I62_RS02455 dprB 503083..503487 (+) 405 WP_139533226.1 Holliday junction resolvase RuvX Machinery gene
  D4I62_RS02460 - 503623..504090 (+) 468 WP_139533227.1 tetratricopeptide repeat protein -
  D4I62_RS02465 - 504274..504612 (+) 339 WP_120820197.1 hypothetical protein -
  D4I62_RS02470 - 504596..505162 (+) 567 WP_139533228.1 hypothetical protein -
  D4I62_RS02475 - 505266..506147 (-) 882 WP_139533229.1 RluA family pseudouridine synthase -
  D4I62_RS02480 recJ 506147..507697 (-) 1551 WP_139533230.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15269.67 Da        Isoelectric Point: 9.0345

>NTDB_id=320234 D4I62_RS02455 WP_139533226.1 503083..503487(+) (dprB) [Helicobacter pylori strain 24-A-EK1]
MILACDVGLKRIGIAALLNGVILPLEAILRRNKNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILERYYQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=320234 D4I62_RS02455 WP_139533226.1 503083..503487(+) (dprB) [Helicobacter pylori strain 24-A-EK1]
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCGCAACAAAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACGAACGCACGCATTGAGCATTTCATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTATCAAAGATGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTATCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.776

100

0.948

Multiple sequence alignment