Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | D4I62_RS00270 | Genome accession | NZ_CP032907 |
| Coordinates | 61397..61972 (+) | Length | 191 a.a. |
| NCBI ID | WP_139532955.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 24-A-EK1 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 56397..66972
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4I62_RS00245 | uvrD | 57086..59131 (+) | 2046 | WP_201738060.1 | DNA helicase UvrD | - |
| D4I62_RS00250 | flgA | 59128..59784 (+) | 657 | WP_139532953.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| D4I62_RS00255 | - | 59794..60357 (+) | 564 | WP_000780111.1 | UbiX family flavin prenyltransferase | - |
| D4I62_RS00260 | coaD | 60357..60830 (+) | 474 | WP_001169276.1 | pantetheine-phosphate adenylyltransferase | - |
| D4I62_RS00265 | tmk | 60834..61409 (+) | 576 | WP_139532954.1 | dTMP kinase | - |
| D4I62_RS00270 | comFC | 61397..61972 (+) | 576 | WP_139532955.1 | ComF family protein | Machinery gene |
| D4I62_RS00275 | - | 62006..64045 (+) | 2040 | WP_139532956.1 | N-6 DNA methylase | - |
| D4I62_RS00280 | - | 64042..65242 (+) | 1201 | Protein_55 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21194.69 Da Isoelectric Point: 8.6823
>NTDB_id=320222 D4I62_RS00270 WP_139532955.1 61397..61972(+) (comFC) [Helicobacter pylori strain 24-A-EK1]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=320222 D4I62_RS00270 WP_139532955.1 61397..61972(+) (comFC) [Helicobacter pylori strain 24-A-EK1]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTACAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCTATTGATGATAAGATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGACTTTAAGGGCGACTAACGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAACAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAACATTAAAGCACATTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTACAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCTATTGATGATAAGATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGACTTTAAGGGCGACTAACGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAACAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAACATTAAAGCACATTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.335 |
100 |
0.963 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |