Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   TMZ1T_RS17880 Genome accession   NC_011662
Coordinates   4050034..4050435 (+) Length   133 a.a.
NCBI ID   WP_004327486.1    Uniprot ID   N6X8G4
Organism   Thauera aminoaromatica     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4045034..4055435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TMZ1T_RS17855 (Tmz1t_3683) hemL 4045355..4046638 (-) 1284 WP_012586063.1 glutamate-1-semialdehyde 2,1-aminomutase -
  TMZ1T_RS17860 (Tmz1t_3684) - 4046881..4047795 (-) 915 WP_004321320.1 SprB repeat-containing protein -
  TMZ1T_RS17865 (Tmz1t_3685) thiE 4048213..4048845 (-) 633 WP_012586064.1 thiamine phosphate synthase -
  TMZ1T_RS17870 (Tmz1t_3686) - 4048838..4049722 (-) 885 WP_012586065.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  TMZ1T_RS17875 (Tmz1t_3687) - 4049841..4049993 (+) 153 WP_049766948.1 rubredoxin -
  TMZ1T_RS17880 (Tmz1t_3688) pilG 4050034..4050435 (+) 402 WP_004327486.1 PleD family two-component system response regulator Regulator
  TMZ1T_RS17885 (Tmz1t_3689) - 4050455..4050820 (+) 366 WP_012586067.1 PleD family two-component system response regulator -
  TMZ1T_RS17890 (Tmz1t_3690) - 4050826..4051332 (+) 507 WP_004327492.1 chemotaxis protein CheW -
  TMZ1T_RS17895 (Tmz1t_3691) - 4051382..4053496 (+) 2115 WP_012586068.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14473.69 Da        Isoelectric Point: 7.2447

>NTDB_id=32020 TMZ1T_RS17880 WP_004327486.1 4050034..4050435(+) (pilG) [Thauera aminoaromatica]
MDLAGLKVMVIDDSNTIRRSAEIFLAQAGCEVVLAEDGFDALAKIADHHPDVIFVDIMMPRLDGYQTCALIKKNPRLSPT
PVIMLSSRDGLFDRARGRMAGSDEYLTKPFTKDSLLRAVASHARRGGDAARAG

Nucleotide


Download         Length: 402 bp        

>NTDB_id=32020 TMZ1T_RS17880 WP_004327486.1 4050034..4050435(+) (pilG) [Thauera aminoaromatica]
ATGGACCTTGCCGGCCTGAAGGTGATGGTCATCGACGACAGCAACACGATCCGCCGCAGCGCCGAGATCTTCCTCGCCCA
GGCGGGCTGCGAGGTCGTCCTCGCCGAGGACGGTTTCGACGCACTCGCGAAGATCGCCGACCACCACCCCGACGTCATCT
TCGTGGACATCATGATGCCGCGCCTCGATGGCTACCAGACCTGTGCGCTGATCAAGAAGAACCCCCGCCTGTCGCCCACG
CCGGTGATCATGCTGTCCTCGCGCGACGGCCTCTTCGACCGCGCGCGCGGACGCATGGCGGGCTCCGACGAATACCTCAC
CAAACCCTTCACCAAGGACAGCCTGTTGCGGGCGGTCGCCAGCCACGCACGGCGCGGCGGCGATGCGGCGCGCGCAGGCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N6X8G4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

66.942

90.977

0.609
  vicR Streptococcus mutans UA159

38.095

94.737

0.361

Multiple sequence alignment