Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   D4J22_RS07780 Genome accession   NZ_CP032905
Coordinates   1570503..1570766 (-) Length   87 a.a.
NCBI ID   WP_000584956.1    Uniprot ID   -
Organism   Helicobacter pylori strain 26-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1565503..1575766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4J22_RS07765 - 1566496..1567836 (-) 1341 WP_201736854.1 hypothetical protein -
  D4J22_RS07775 comB4 1568138..1570501 (-) 2364 WP_139547588.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4J22_RS07780 comB3 1570503..1570766 (-) 264 WP_000584956.1 hypothetical protein Machinery gene
  D4J22_RS07785 comB2 1570766..1571047 (-) 282 WP_001279601.1 TrbC/VirB2 family protein Machinery gene
  D4J22_RS07790 - 1571193..1572020 (-) 828 WP_139547589.1 DUF5718 family protein -
  D4J22_RS07795 - 1572112..1573164 (-) 1053 WP_139547590.1 MnmA/TRMU family protein -
  D4J22_RS07800 dnaG 1573161..1574840 (-) 1680 WP_139547591.1 DNA primase -
  D4J22_RS07810 groES 1575115..1575471 (+) 357 WP_000671934.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10006.08 Da        Isoelectric Point: 9.5290

>NTDB_id=320199 D4J22_RS07780 WP_000584956.1 1570503..1570766(-) (comB3) [Helicobacter pylori strain 26-A-EK1]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=320199 D4J22_RS07780 WP_000584956.1 1570503..1570766(-) (comB3) [Helicobacter pylori strain 26-A-EK1]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCCGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment