Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   TMZ1T_RS17495 Genome accession   NC_011662
Coordinates   3972249..3973634 (-) Length   461 a.a.
NCBI ID   WP_012586039.1    Uniprot ID   -
Organism   Thauera aminoaromatica     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3967249..3978634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TMZ1T_RS17475 (Tmz1t_3612) ahpF 3968174..3969733 (-) 1560 WP_012586038.1 alkyl hydroperoxide reductase subunit F -
  TMZ1T_RS17480 (Tmz1t_3613) ahpC 3969865..3970428 (-) 564 WP_004299307.1 alkyl hydroperoxide reductase subunit C -
  TMZ1T_RS17485 (Tmz1t_3614) ftsX 3970661..3971557 (-) 897 WP_004299309.1 permease-like cell division protein FtsX -
  TMZ1T_RS17490 (Tmz1t_3615) - 3971554..3972252 (-) 699 WP_004299311.1 cell division ATP-binding protein FtsE -
  TMZ1T_RS17495 (Tmz1t_3616) pilA 3972249..3973634 (-) 1386 WP_012586039.1 signal recognition particle-docking protein FtsY Machinery gene
  TMZ1T_RS17500 (Tmz1t_3617) - 3973799..3975211 (+) 1413 WP_012586040.1 pitrilysin family protein -
  TMZ1T_RS17505 (Tmz1t_3618) - 3975238..3976641 (+) 1404 WP_012586041.1 pitrilysin family protein -
  TMZ1T_RS17510 (Tmz1t_3619) rsmD 3976638..3977177 (+) 540 WP_012586042.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  TMZ1T_RS17515 (Tmz1t_3620) coaD 3977174..3977662 (+) 489 WP_004308339.1 pantetheine-phosphate adenylyltransferase -
  TMZ1T_RS17520 (Tmz1t_3621) - 3977682..3977933 (+) 252 WP_004308341.1 YfhL family 4Fe-4S dicluster ferredoxin -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48390.86 Da        Isoelectric Point: 4.6141

>NTDB_id=32019 TMZ1T_RS17495 WP_012586039.1 3972249..3973634(-) (pilA) [Thauera aminoaromatica]
MFGFLKKKFGKSVDEARPAEQAAEEQTASEVRAEDLAGAPAPQAPAEASVAEAARRDAAEIDATAEPVEPAALPESPAQP
AAEAAALAEPEPAAQAPAEAVPEPQPEPPGESTPEAPVAVEPAIEAEPEAEPEPEPEPSAAAAVAKKSWTERLKAGLART
RNQIGGGLASLFGLRKIDEDLLEELESTLLMADCGVDATQHLIDDLRRRWKRDRLETADQLQKALADGLHEIIAPLEAPL
EVAGHRPFIIMIAGVNGSGKTTSIGKLAKYFQAHGKSVLLAAGDTFRAAAREQLMTWGERNNVTVVAQDSGDAAAVIFDA
INAARARKIDVVLADTAGRLPTQLHLMEEIAKVRRVIAKADPSGPHEVLLVLDANIGQNALAQVKAFDKAIGVTGLVVTK
LDGTAKGGVLAAIARQCPKPLRFIGVGEGIDDLQPFKAREFVDALFEPGAGAVKAGAEARR

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=32019 TMZ1T_RS17495 WP_012586039.1 3972249..3973634(-) (pilA) [Thauera aminoaromatica]
ATGTTTGGTTTCCTGAAGAAGAAGTTCGGCAAGTCTGTCGACGAGGCCAGGCCCGCCGAGCAGGCTGCCGAGGAGCAGAC
CGCCTCCGAGGTCCGCGCCGAAGACCTCGCCGGCGCGCCGGCGCCGCAAGCGCCCGCGGAGGCCTCGGTGGCCGAGGCTG
CGCGTCGCGACGCGGCGGAGATCGACGCGACCGCAGAGCCCGTCGAGCCCGCTGCGCTGCCCGAATCCCCTGCGCAGCCG
GCCGCCGAGGCGGCGGCCCTTGCCGAGCCGGAGCCCGCTGCGCAGGCGCCAGCCGAAGCCGTGCCCGAGCCGCAGCCGGA
ACCCCCGGGCGAGTCGACGCCCGAAGCCCCCGTCGCGGTCGAGCCGGCGATCGAAGCCGAACCCGAAGCCGAGCCGGAGC
CGGAGCCGGAGCCGTCCGCCGCCGCCGCGGTCGCGAAGAAGTCGTGGACCGAGCGCCTCAAGGCCGGCCTCGCGCGCACT
CGGAACCAGATCGGCGGAGGGCTGGCGAGCCTGTTCGGCCTGCGCAAGATCGACGAGGACCTGCTCGAGGAGCTCGAATC
CACCCTGCTGATGGCCGACTGCGGCGTCGACGCCACCCAGCACCTGATCGACGACCTGCGCCGGCGCTGGAAGCGCGACC
GCCTGGAGACCGCCGACCAGCTGCAGAAGGCGCTCGCCGACGGCCTGCACGAGATCATCGCGCCGCTCGAAGCGCCGCTC
GAGGTCGCAGGTCATCGCCCCTTCATCATCATGATCGCGGGCGTCAACGGCTCCGGGAAGACGACCTCGATCGGCAAGCT
GGCCAAGTACTTCCAGGCCCATGGCAAGAGCGTGCTGCTCGCCGCGGGCGACACCTTCCGCGCCGCCGCGCGCGAGCAGC
TGATGACCTGGGGCGAGCGCAACAACGTCACCGTGGTGGCGCAGGACAGCGGCGACGCCGCGGCGGTGATCTTCGACGCC
ATCAACGCCGCACGTGCGCGCAAGATCGACGTCGTGCTCGCCGACACCGCCGGCCGCCTGCCCACCCAGCTCCACCTCAT
GGAAGAGATCGCCAAGGTGCGCCGGGTGATCGCCAAGGCCGACCCGAGCGGGCCGCACGAGGTGCTGCTGGTGCTCGACG
CCAACATCGGCCAGAACGCGCTCGCCCAGGTGAAGGCCTTCGACAAGGCGATCGGCGTCACCGGCCTGGTGGTCACCAAG
CTCGACGGCACCGCCAAGGGCGGCGTGCTGGCGGCGATCGCGCGCCAGTGCCCCAAGCCGCTGCGCTTCATCGGCGTCGG
CGAGGGCATCGACGACCTGCAGCCGTTCAAGGCGCGCGAGTTCGTCGATGCGCTCTTCGAGCCGGGTGCCGGTGCGGTCA
AGGCGGGAGCGGAAGCGCGCAGATGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(164-228)

SRP54-type protein, GTPase domain (SRP54)

(248-446)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

51.22

97.831

0.501

Multiple sequence alignment