Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   D4J22_RS06150 Genome accession   NZ_CP032905
Coordinates   1240533..1240937 (-) Length   134 a.a.
NCBI ID   WP_139547406.1    Uniprot ID   -
Organism   Helicobacter pylori strain 26-A-EK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1235533..1245937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4J22_RS06100 - 1236318..1236653 (-) 336 WP_001862999.1 hypothetical protein -
  D4J22_RS06105 - 1236643..1237429 (-) 787 Protein_1163 hypothetical protein -
  D4J22_RS06110 - 1237429..1237810 (-) 382 Protein_1164 DUF1294 domain-containing protein -
  D4J22_RS08575 - 1238108..1238533 (-) 426 WP_236636009.1 hypothetical protein -
  D4J22_RS06130 - 1238795..1239361 (-) 567 WP_139547403.1 hypothetical protein -
  D4J22_RS06135 - 1239345..1239650 (-) 306 WP_139547404.1 hypothetical protein -
  D4J22_RS06145 - 1239835..1240402 (-) 568 Protein_1168 tetratricopeptide repeat protein -
  D4J22_RS06150 dprB 1240533..1240937 (-) 405 WP_139547406.1 Holliday junction resolvase RuvX Machinery gene
  D4J22_RS06155 dprA 1240934..1241734 (-) 801 WP_139547407.1 DNA-processing protein DprA Machinery gene
  D4J22_RS06160 minE 1241741..1241974 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  D4J22_RS06165 minD 1241971..1242777 (-) 807 WP_078252647.1 septum site-determining protein MinD -
  D4J22_RS06170 ilvC 1242801..1243793 (-) 993 WP_139547408.1 ketol-acid reductoisomerase -
  D4J22_RS06180 - 1244042..1244824 (+) 783 WP_139547409.1 NAD+ synthase -
  D4J22_RS06185 - 1244821..1245759 (+) 939 WP_139547410.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15196.60 Da        Isoelectric Point: 8.7230

>NTDB_id=320189 D4J22_RS06150 WP_139547406.1 1240533..1240937(-) (dprB) [Helicobacter pylori strain 26-A-EK1]
MILACDVGLKRIGIAVLLNGAILPLEAILRRNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDSSSVEAYENLEHLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=320189 D4J22_RS06150 WP_139547406.1 1240533..1240937(-) (dprB) [Helicobacter pylori strain 26-A-EK1]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGTGCTTTTAAACGGCGCTATCTTGCCCTTAGAAGC
GATTTTACGCCGCAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAATATTCAGGTGCTAGTGG
TGGGCAAGCCTAATGAAAGCTATGCGGATACGAATGCGCGCATTGAGCATTTCATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAGTTCTAGCGTAGAAGCTTATGAAAATTTAGAGCATTTGGGTAGGAAAAATAAGCGGCT
CGCTATCAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.03

100

0.94

Multiple sequence alignment