Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | D4J22_RS00270 | Genome accession | NZ_CP032905 |
| Coordinates | 60085..60660 (+) | Length | 191 a.a. |
| NCBI ID | WP_139546761.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 26-A-EK1 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 55085..65660
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4J22_RS00245 | uvrD | 55776..57821 (+) | 2046 | WP_201736856.1 | DNA helicase UvrD | - |
| D4J22_RS00250 | flgA | 57818..58474 (+) | 657 | WP_139546759.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| D4J22_RS00255 | - | 58484..59047 (+) | 564 | WP_000780122.1 | UbiX family flavin prenyltransferase | - |
| D4J22_RS00260 | coaD | 59047..59520 (+) | 474 | WP_001169242.1 | pantetheine-phosphate adenylyltransferase | - |
| D4J22_RS00265 | tmk | 59522..60097 (+) | 576 | WP_139546760.1 | dTMP kinase | - |
| D4J22_RS00270 | comFC | 60085..60660 (+) | 576 | WP_139546761.1 | ComF family protein | Machinery gene |
| D4J22_RS00275 | - | 60693..62729 (+) | 2037 | WP_139546762.1 | N-6 DNA methylase | - |
| D4J22_RS08245 | - | 62726..63977 (+) | 1252 | Protein_55 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21389.01 Da Isoelectric Point: 9.2848
>NTDB_id=320180 D4J22_RS00270 WP_139546761.1 60085..60660(+) (comFC) [Helicobacter pylori strain 26-A-EK1]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRNFKFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRNFKFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=320180 D4J22_RS00270 WP_139546761.1 60085..60660(+) (comFC) [Helicobacter pylori strain 26-A-EK1]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTGAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAGGCCGGCGCAGAGTTTGTGAGAATCTTGCAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTTAAATTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCACTTTGCGATCGCGCTTTG
CAGTGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTGAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAGGCCGGCGCAGAGTTTGTGAGAATCTTGCAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTTAAATTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCACTTTGCGATCGCGCTTTG
CAGTGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
97.906 |
100 |
0.979 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |