Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   D4K20_RS05820 Genome accession   NZ_CP032903
Coordinates   1191213..1191617 (-) Length   134 a.a.
NCBI ID   WP_120967715.1    Uniprot ID   -
Organism   Helicobacter pylori strain 173-A-EK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1186213..1196617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K20_RS05790 - 1187103..1187888 (-) 786 WP_139545434.1 hypothetical protein -
  D4K20_RS05795 - 1187888..1188212 (-) 325 Protein_1101 DUF1294 domain-containing protein -
  D4K20_RS08355 - 1188581..1188832 (-) 252 WP_198518005.1 lysozyme -
  D4K20_RS08360 - 1188835..1189041 (-) 207 WP_236634924.1 lysozyme -
  D4K20_RS05805 - 1189097..1189663 (-) 567 WP_139545435.1 hypothetical protein -
  D4K20_RS05810 - 1189647..1189952 (-) 306 WP_033590115.1 hypothetical protein -
  D4K20_RS05815 - 1190066..1190926 (-) 861 WP_139545436.1 tetratricopeptide repeat protein -
  D4K20_RS05820 dprB 1191213..1191617 (-) 405 WP_120967715.1 Holliday junction resolvase RuvX Machinery gene
  D4K20_RS05825 dprA 1191614..1192414 (-) 801 WP_139545437.1 DNA-processing protein DprA Machinery gene
  D4K20_RS05830 minE 1192421..1192654 (-) 234 WP_000051425.1 cell division topological specificity factor MinE -
  D4K20_RS05835 minD 1192651..1193457 (-) 807 WP_001019051.1 septum site-determining protein MinD -
  D4K20_RS05840 ilvC 1193481..1194473 (-) 993 WP_139545438.1 ketol-acid reductoisomerase -
  D4K20_RS05850 - 1194723..1195505 (+) 783 WP_139545439.1 NAD+ synthase -
  D4K20_RS05855 - 1195502..1196440 (+) 939 WP_139545440.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15232.68 Da        Isoelectric Point: 9.1839

>NTDB_id=320144 D4K20_RS05820 WP_120967715.1 1191213..1191617(-) (dprB) [Helicobacter pylori strain 173-A-EK1]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLRKKNIQVLVVGKPNESYADTNARIEHFIKLVDFTGE
IVFINEDRSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=320144 D4K20_RS05820 WP_120967715.1 1191213..1191617(-) (dprB) [Helicobacter pylori strain 173-A-EK1]
ATGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCGCTTTTAAACGGCGTTATCTTGCCCTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAAAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACGAACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTACGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCTTATGAAAATTTAGAGCATTTGGGTAGGAAAAATAAGAGGCT
CGCTATTAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATCTTAGAACGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.269

100

0.963

Multiple sequence alignment