Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | D4K20_RS00280 | Genome accession | NZ_CP032903 |
| Coordinates | 63247..63822 (+) | Length | 191 a.a. |
| NCBI ID | WP_139544739.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 173-A-EK1 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 58247..68822
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4K20_RS00255 | uvrD | 58938..60983 (+) | 2046 | WP_201737797.1 | DNA helicase UvrD | - |
| D4K20_RS00260 | flgA | 60980..61636 (+) | 657 | WP_139544736.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| D4K20_RS00265 | - | 61646..62209 (+) | 564 | WP_108346810.1 | UbiX family flavin prenyltransferase | - |
| D4K20_RS00270 | coaD | 62209..62682 (+) | 474 | WP_139544737.1 | pantetheine-phosphate adenylyltransferase | - |
| D4K20_RS00275 | tmk | 62684..63259 (+) | 576 | WP_139544738.1 | dTMP kinase | - |
| D4K20_RS00280 | comFC | 63247..63822 (+) | 576 | WP_139544739.1 | ComF family protein | Machinery gene |
| D4K20_RS00285 | - | 63856..65892 (+) | 2037 | WP_139544740.1 | N-6 DNA methylase | - |
| D4K20_RS00290 | - | 65889..67142 (+) | 1254 | WP_139544741.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21508.13 Da Isoelectric Point: 9.4455
>NTDB_id=320137 D4K20_RS00280 WP_139544739.1 63247..63822(+) (comFC) [Helicobacter pylori strain 173-A-EK1]
MRCLTCLKLSFKPLCPNCLNDLPLNLKVRVLESVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRTNNPRNFKFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLNLKVRVLESVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRTNNPRNFKFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=320137 D4K20_RS00280 WP_139544739.1 63247..63822(+) (comFC) [Helicobacter pylori strain 173-A-EK1]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCCCTTTGTCCAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
GGTAAGGGTTTTAGAGAGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTACAAGAACAAGGC
TTGAATATCCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGCCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCACTAACAACCCACGGAATTTTAAATTCAAAGGCGATAAAAATTTAGATTATTTTTTACTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACTCTAAACATCAAAACGCATTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCCCTTTGTCCAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
GGTAAGGGTTTTAGAGAGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTACAAGAACAAGGC
TTGAATATCCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGCCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCACTAACAACCCACGGAATTTTAAATTCAAAGGCGATAAAAATTTAGATTATTTTTTACTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACTCTAAACATCAAAACGCATTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.788 |
100 |
0.372 |