Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   D4K63_RS07325 Genome accession   NZ_CP032901
Coordinates   1482381..1483118 (-) Length   245 a.a.
NCBI ID   WP_139532725.1    Uniprot ID   -
Organism   Helicobacter pylori strain 381-A-EK4     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1477381..1488118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K63_RS07305 gmd 1477604..1478749 (-) 1146 WP_139532719.1 GDP-mannose 4,6-dehydratase -
  D4K63_RS07310 - 1478784..1480196 (-) 1413 WP_139532720.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  D4K63_RS07315 comB10 1480266..1481402 (-) 1137 WP_139532722.1 DNA type IV secretion system protein ComB10 Machinery gene
  D4K63_RS07320 comB9 1481395..1482381 (-) 987 WP_139532724.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  D4K63_RS07325 comB8 1482381..1483118 (-) 738 WP_139532725.1 virB8 family protein Machinery gene
  D4K63_RS07330 comB7 1483115..1483228 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  D4K63_RS07335 comB6 1483244..1484299 (-) 1056 WP_139532727.1 P-type conjugative transfer protein TrbL Machinery gene
  D4K63_RS07340 - 1484307..1485302 (-) 996 WP_139532911.1 PDZ domain-containing protein -
  D4K63_RS07345 - 1485302..1485595 (-) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  D4K63_RS07350 panD 1485606..1485956 (-) 351 WP_000142242.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28519.70 Da        Isoelectric Point: 9.2597

>NTDB_id=320108 D4K63_RS07325 WP_139532725.1 1482381..1483118(-) (comB8) [Helicobacter pylori strain 381-A-EK4]
MKEKPFNSEQLIYLEELLSRQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLTNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=320108 D4K63_RS07325 WP_139532725.1 1482381..1483118(-) (comB8) [Helicobacter pylori strain 381-A-EK4]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCGCCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTCAGATTGGAGAGAAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGACTTTTTAAATCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGTATTAATCGCATTGATGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATTTAT
GCGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCCATTGCGGCTAAACTAACGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAGATCGTATTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.356

100

0.971

Multiple sequence alignment