Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   E6P00_RS12435 Genome accession   NZ_CP040127
Coordinates   2075780..2076109 (+) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain PA298     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2070780..2081109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E6P00_RS12420 (E6P00_12420) - 2070822..2071840 (+) 1019 Protein_1943 glycosyltransferase family 4 protein -
  E6P00_RS12425 (E6P00_12425) - 2071918..2072968 (+) 1051 Protein_1944 IS3 family transposase -
  E6P00_RS12430 (E6P00_12430) - 2073592..2075589 (+) 1998 WP_003119734.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  E6P00_RS12435 (E6P00_12435) comEA/comE1 2075780..2076109 (+) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  E6P00_RS12445 (E6P00_12445) - 2076327..2077523 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  E6P00_RS12450 (E6P00_12450) uvrB 2077711..2079723 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=320105 E6P00_RS12435 WP_003104586.1 2075780..2076109(+) (comEA/comE1) [Pseudomonas aeruginosa strain PA298]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=320105 E6P00_RS12435 WP_003104586.1 2075780..2076109(+) (comEA/comE1) [Pseudomonas aeruginosa strain PA298]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment