Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   D4K63_RS05815 Genome accession   NZ_CP032901
Coordinates   1174227..1174631 (-) Length   134 a.a.
NCBI ID   WP_139532493.1    Uniprot ID   -
Organism   Helicobacter pylori strain 381-A-EK4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1169227..1179631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K63_RS05770 - 1169929..1170264 (-) 336 WP_001862999.1 hypothetical protein -
  D4K63_RS05775 - 1170254..1171039 (-) 786 WP_139532488.1 hypothetical protein -
  D4K63_RS05780 - 1171039..1171420 (-) 382 Protein_1110 DUF1294 domain-containing protein -
  D4K63_RS05790 - 1171717..1171983 (-) 267 WP_001883605.1 hypothetical protein -
  D4K63_RS05795 - 1171971..1172345 (-) 375 WP_001882828.1 lysozyme -
  D4K63_RS05800 - 1172402..1172962 (-) 561 WP_139532490.1 hypothetical protein -
  D4K63_RS05805 - 1172946..1173284 (-) 339 WP_139532492.1 hypothetical protein -
  D4K63_RS05810 - 1173411..1173992 (-) 582 WP_120906710.1 tetratricopeptide repeat protein -
  D4K63_RS05815 dprB 1174227..1174631 (-) 405 WP_139532493.1 Holliday junction resolvase RuvX Machinery gene
  D4K63_RS05820 dprA 1174628..1175428 (-) 801 WP_139532495.1 DNA-processing protein DprA Machinery gene
  D4K63_RS05825 minE 1175435..1175668 (-) 234 WP_139532497.1 cell division topological specificity factor MinE -
  D4K63_RS05830 minD 1175665..1176471 (-) 807 WP_139532499.1 septum site-determining protein MinD -
  D4K63_RS05835 ilvC 1176495..1177487 (-) 993 WP_139532501.1 ketol-acid reductoisomerase -
  D4K63_RS05845 - 1177736..1178518 (+) 783 WP_139532502.1 NAD+ synthase -
  D4K63_RS05850 - 1178515..1179453 (+) 939 WP_139532504.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15196.68 Da        Isoelectric Point: 9.1627

>NTDB_id=320102 D4K63_RS05815 WP_139532493.1 1174227..1174631(-) (dprB) [Helicobacter pylori strain 381-A-EK4]
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKG

Nucleotide


Download         Length: 405 bp        

>NTDB_id=320102 D4K63_RS05815 WP_139532493.1 1174227..1174631(-) (dprB) [Helicobacter pylori strain 381-A-EK4]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTACGCTTTTAAACGGCGTTATCTTGCCCTTAGAAGC
GATTTTACGCCACAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACGAACGCGCGCATTGAGCATTTCATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
TGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAAGG
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

97.727

98.507

0.963

Multiple sequence alignment