Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ECSF_RS13005 Genome accession   NC_013654
Coordinates   2660033..2660770 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli SE15     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2655033..2665770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECSF_RS12990 (ECSF_2430) clpC 2655487..2658060 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  ECSF_RS12995 (ECSF_2431) yfiH 2658190..2658921 (-) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  ECSF_RS13000 (ECSF_2432) rluD 2658918..2659898 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ECSF_RS13005 (ECSF_2433) comL 2660033..2660770 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  ECSF_RS13015 (ECSF_2434) raiA 2661040..2661381 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ECSF_RS25950 pheL 2661485..2661532 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ECSF_RS13020 (ECSF_2435) pheA 2661631..2662791 (+) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  ECSF_RS13025 (ECSF_2436) tyrA 2662834..2663955 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ECSF_RS13030 (ECSF_2437) aroF 2663966..2665036 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ECSF_RS13035 (ECSF_2438) yfiL 2665246..2665611 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=31994 ECSF_RS13005 WP_000197686.1 2660033..2660770(+) (comL) [Escherichia coli SE15]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=31994 ECSF_RS13005 WP_000197686.1 2660033..2660770(+) (comL) [Escherichia coli SE15]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCACCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376