Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   D9C08_RS01400 Genome accession   NZ_CP032872
Coordinates   261957..262076 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. subtilis strain 2KL1     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 256957..267076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C08_RS01375 (D9C08_01375) albG 257125..257826 (+) 702 WP_069837830.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  D9C08_RS01380 (D9C08_01380) ywhL 257832..259208 (-) 1377 WP_069837831.1 YncE family protein -
  D9C08_RS01385 (D9C08_01385) ywhK 259247..260598 (-) 1352 Protein_272 YncE family protein -
  D9C08_RS24120 (D9C08_01390) - 260595..260825 (-) 231 Protein_273 hypothetical protein -
  D9C08_RS01395 (D9C08_01395) rapF 260828..261973 (+) 1146 WP_069837832.1 response regulator aspartate phosphatase RapF Regulator
  D9C08_RS01400 (D9C08_01400) phrF 261957..262076 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  D9C08_RS01405 (D9C08_01405) - 262174..262601 (+) 428 Protein_276 YbaK/EbsC family protein -
  D9C08_RS01410 (D9C08_01410) speB 262666..263538 (-) 873 WP_003227545.1 agmatinase -
  D9C08_RS01415 (D9C08_01415) speE 263599..264429 (-) 831 WP_003227543.1 spermidine synthase -
  D9C08_RS01420 (D9C08_01420) pbpG 264631..266706 (+) 2076 WP_069837833.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=319892 D9C08_RS01400 WP_009968329.1 261957..262076(+) (phrF) [Bacillus subtilis subsp. subtilis strain 2KL1]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=319892 D9C08_RS01400 WP_009968329.1 261957..262076(+) (phrF) [Bacillus subtilis subsp. subtilis strain 2KL1]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment