Detailed information NTG0319876

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: D9N00_RS27290
• Genome accession: NZ_CP032871
• Coordinates: 5537251..5538591 (+)
• Length: 446 a.a.
• NCBI ID: WP_017683544.1
• Uniprot ID: A0AAN4QBI6
• Organism: Pseudomonas syringae pv. actinidiae strain P220
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5532251..5543591

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9N00_RS27265 (D9N00_27265)	pgeF	5532435..5533163 (-)	729	WP_017683543.1	peptidoglycan editing factor PgeF	-
D9N00_RS27270 (D9N00_27270)	rluD	5533160..5534122 (-)	963	WP_003381266.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
D9N00_RS27275 (D9N00_27275)	-	5534272..5535294 (+)	1023	WP_003381267.1	outer membrane protein assembly factor BamD	-
D9N00_RS27280 (D9N00_27280)	-	5535424..5535663 (+)	240	WP_057403016.1	PP0621 family protein	-
D9N00_RS27285 (D9N00_27285)	pilS	5535653..5537248 (+)	1596	WP_003381271.1	ATP-binding protein	Regulator
D9N00_RS27290 (D9N00_27290)	pilR	5537251..5538591 (+)	1341	WP_017683544.1	sigma-54 dependent transcriptional regulator	Regulator
D9N00_RS27295 (D9N00_27295)	-	5539052..5539669 (+)	618	WP_003381275.1	TetR/AcrR family transcriptional regulator	-
D9N00_RS27300 (D9N00_27300)	-	5539751..5540866 (+)	1116	WP_017683545.1	efflux RND transporter periplasmic adaptor subunit	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49937.04 Da
• Isoelectric Point: 6.8233

>NTDB_id=319876 D9N00_RS27290 WP_017683544.1 5537251..5538591(+) (pilR) [Pseudomonas syringae pv. actinidiae strain P220]
MSPRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVNSALSLPCATQPVRSIDSRLLGDSPPMRTLRNQIGKLARSQAPI
YISGESGSGKELVARLIHEQGPRINKPFVPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSVGGQQEQVVDVRILCATHKDLNVEVAAGRFRQDLYYRLNVIELRVPSLRERREDIDQIAAS
VLRRLAGNGAQPVARVHAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESASPQAQQGANLADIDNLE
DYLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=319876 D9N00_RS27290 WP_017683544.1 5537251..5538591(+) (pilR) [Pseudomonas syringae pv. actinidiae strain P220]
ATGAGCCCACGGCAAAAGATCCTGATAGTCGATGATGAGCCGGATATTCGCGAGCTTCTGGAGATCACCCTCGGGCGCAT
GAAGCTCGACACCCGCAGCGCTCGCAACGTTGCCGAGGCCCATGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGA
CCGACATGCGCCTGCCCGATGGCAACGGCCTGGAACTGGTGCAGCACATCCAGCACGGCTACCCCCATGTGCCGGTGGCG
ATGATCACCGCCCACGGCAATCTGGACACGGCGATTCATGCGTTGAAAGCCGGAGCCTTCGACTTTGTGACCAAACCGGT
AGACCTCAACCGGCTCCGCGAACTGGTCAATAGTGCGCTGAGCCTGCCCTGCGCCACCCAACCGGTACGCAGCATCGACA
GCCGGCTGCTGGGCGACTCACCGCCGATGCGTACCTTGCGTAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCCATT
TACATCAGCGGCGAGTCGGGCAGCGGCAAAGAGCTGGTAGCCCGGCTGATCCACGAGCAAGGGCCGCGCATCAACAAACC
CTTCGTGCCGGTCAACTGCGGGGCGATTCCATCCGAATTGATGGAGAGCGAATTCTTCGGCCATCGCAAAGGCAGCTTCA
GCGGTGCCCACGAAGACAAGCCGGGCCTATTCCAGGCGGCACACAACGGGACACTGTTCCTTGATGAGGTCGCCGATCTG
CCGCTGGCCATGCAGGTAAAACTGCTGCGCGCGATCCAGGAGAAGTCCATCCGCAGCGTCGGCGGTCAGCAGGAGCAGGT
CGTGGACGTGCGTATTCTGTGCGCCACCCACAAGGACCTGAATGTCGAAGTCGCTGCGGGCCGTTTCCGTCAGGACCTGT
ATTACCGGCTTAACGTGATCGAACTGCGTGTGCCTTCATTGCGCGAGCGGCGTGAAGATATCGATCAGATTGCAGCCAGC
GTTTTGCGACGGCTTGCCGGCAACGGCGCTCAGCCCGTCGCGCGCGTGCATGCGCAGGCTCTGGAAACACTGAAAAGTTA
TCGATTCCCTGGGAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACCCTCTGTGAAAACGATGAAATCCACG
CCAGCGACCTGCGCCTCGCCGAGTCCGCCAGCCCCCAGGCACAACAGGGTGCGAACCTGGCTGATATCGATAACCTGGAA
GACTACCTGGAAAGCATCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACCGCCGCGGCCGA
GCGGCTCAGTTTGTCATTCAGATCGTTGCGCTATCGGTTGAAGAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	77.878	99.327	0.774
pilR	Acinetobacter baumannii strain A118	48.261	100	0.498