Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FDV79_RS03825 Genome accession   NZ_CP040103
Coordinates   810433..811161 (-) Length   242 a.a.
NCBI ID   WP_020904194.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LVP66     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 805433..816161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDV79_RS03800 (FDV79_04100) trpR 805819..806130 (+) 312 WP_020904197.1 trp operon repressor -
  FDV79_RS03805 (FDV79_04105) yjjX 806179..806712 (-) 534 WP_021453510.1 inosine/xanthosine triphosphatase -
  FDV79_RS03810 (FDV79_04110) pheA 806737..807915 (-) 1179 WP_005468591.1 prephenate dehydratase -
  FDV79_RS03815 (FDV79_04115) hpf 808159..808485 (-) 327 WP_005468590.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FDV79_RS03820 (FDV79_04120) - 808816..810297 (-) 1482 WP_341846473.1 lytic transglycosylase F -
  FDV79_RS03825 (FDV79_04125) comL 810433..811161 (-) 729 WP_020904194.1 outer membrane protein assembly factor BamD Machinery gene
  FDV79_RS03830 (FDV79_04130) rluD 811298..812275 (+) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FDV79_RS03835 (FDV79_04135) pgeF 812277..813005 (+) 729 WP_140114175.1 peptidoglycan editing factor PgeF -
  FDV79_RS03840 (FDV79_04140) clpC 813153..815726 (+) 2574 WP_025627834.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27875.81 Da        Isoelectric Point: 5.8151

>NTDB_id=319866 FDV79_RS03825 WP_020904194.1 810433..811161(-) (comL) [Vibrio parahaemolyticus strain LVP66]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFNIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=319866 FDV79_RS03825 WP_020904194.1 810433..811161(-) (comL) [Vibrio parahaemolyticus strain LVP66]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGATCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTCAACCCGACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAACATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTAGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATCGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

40.833

99.174

0.405
  comL Neisseria gonorrhoeae MS11

40.417

99.174

0.401

Multiple sequence alignment