Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HYN43_RS21525 Genome accession   NZ_CP032869
Coordinates   5227716..5229134 (+) Length   472 a.a.
NCBI ID   WP_119406002.1    Uniprot ID   A0A494W2H1
Organism   Mucilaginibacter celer strain HYN0043     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5222716..5234134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYN43_RS21500 (HYN43_021500) - 5223670..5225220 (+) 1551 WP_109609550.1 Rne/Rng family ribonuclease -
  HYN43_RS21505 (HYN43_021505) - 5225337..5225780 (-) 444 WP_119405998.1 hypothetical protein -
  HYN43_RS21510 (HYN43_021510) - 5225788..5226183 (-) 396 WP_119405999.1 hypothetical protein -
  HYN43_RS21515 (HYN43_021515) - 5226287..5227018 (-) 732 WP_162996572.1 hypothetical protein -
  HYN43_RS21520 (HYN43_021520) - 5227047..5227490 (-) 444 WP_119406001.1 hypothetical protein -
  HYN43_RS21525 (HYN43_021525) radA 5227716..5229134 (+) 1419 WP_119406002.1 DNA repair protein RadA Machinery gene
  HYN43_RS21530 (HYN43_021530) - 5229274..5230647 (-) 1374 WP_119406003.1 NHL repeat-containing protein -
  HYN43_RS21535 (HYN43_021535) - 5230837..5231304 (+) 468 WP_119406004.1 DUF4920 domain-containing protein -
  HYN43_RS21540 (HYN43_021540) - 5231366..5232019 (-) 654 WP_119406005.1 hypothetical protein -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 51980.80 Da        Isoelectric Point: 6.6590

>NTDB_id=319850 HYN43_RS21525 WP_119406002.1 5227716..5229134(+) (radA) [Mucilaginibacter celer strain HYN0043]
MAKSKIAYFCQSCGFESPKWLGKCPSCQQWNTFVEEVIEKGGNSVPAWKPASTSQQRANKPVQVADITYTEEHRIPTPDK
EFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALNMPHQKVLYVSGEESDRQIKMRAERLAARPPKGEAIGESAYILTE
TSTQNIFKQIEALEPDIVVIDSIQTLHSSHIESTPGSVSQVRECTAELLRFAKETSTPVFLIGHITKDGMIAGPKILEHM
VDTVLQFEGDRHHVYRILRTIKNRFGSASELGIYEMMGEGLREVSNPSEILLSHRDTPLSGVTISATLEGMRPMLIETQA
LVSASPYGTPQRTATGFDTKRMSMLLAVLEKRCGFRLGVKDVFLNITGGIRVEDPAIDLGLAAAIISSHEDMPIPFKTCF
AGELGLSGEIRAVNRVEQRIAEAQKLGFNQIYISKYNLPASGQDKKRMDLSRYDIDIKIVSTIEEVFSLLFG

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=319850 HYN43_RS21525 WP_119406002.1 5227716..5229134(+) (radA) [Mucilaginibacter celer strain HYN0043]
ATGGCCAAATCCAAAATCGCTTATTTCTGCCAAAGCTGCGGCTTCGAATCGCCCAAATGGTTAGGTAAATGCCCTTCATG
CCAGCAATGGAATACTTTTGTTGAGGAGGTGATTGAAAAAGGCGGCAATTCGGTACCTGCCTGGAAACCGGCCTCAACCA
GCCAGCAGCGGGCCAATAAGCCGGTACAGGTGGCTGATATCACTTATACCGAAGAACACCGCATCCCCACGCCCGATAAA
GAGTTTAACCGTGTATTAGGTGGCGGTATTGTACCGGGATCGTTGGTGCTGATTGGCGGGGAGCCAGGCATTGGTAAATC
AACATTGATGCTGCAGCTCGCTTTAAATATGCCGCACCAAAAAGTGCTGTATGTATCGGGCGAAGAAAGCGACAGGCAGA
TTAAAATGAGGGCAGAAAGGTTAGCGGCCCGCCCGCCAAAGGGAGAAGCCATTGGCGAGTCGGCATATATACTTACCGAA
ACATCAACCCAAAATATTTTTAAACAAATAGAAGCACTCGAGCCGGATATAGTAGTAATTGATTCTATCCAAACCCTGCA
CTCTTCCCATATCGAGTCAACACCGGGCAGCGTATCGCAGGTTAGGGAGTGTACTGCTGAATTACTACGCTTTGCCAAAG
AAACTTCAACGCCGGTATTTTTGATAGGCCATATTACCAAAGACGGCATGATAGCCGGCCCCAAAATACTGGAGCATATG
GTTGATACCGTTTTGCAGTTTGAAGGCGACAGGCACCACGTTTACCGCATTTTGCGCACCATTAAAAACCGTTTCGGTTC
GGCATCCGAACTGGGTATTTATGAAATGATGGGGGAGGGACTGCGTGAAGTTTCCAACCCATCCGAGATCCTGCTCTCGC
ACCGTGATACGCCTTTAAGCGGCGTTACCATTTCGGCTACTTTAGAGGGTATGCGCCCCATGCTGATAGAAACCCAGGCA
CTGGTAAGCGCATCTCCTTATGGAACTCCACAGCGTACAGCTACAGGCTTTGATACCAAACGCATGAGTATGCTGCTGGC
CGTGCTTGAAAAACGCTGCGGTTTCAGGCTGGGAGTTAAAGATGTATTCCTGAACATCACGGGTGGCATCCGGGTGGAAG
ATCCGGCTATTGATCTTGGCCTGGCTGCTGCCATCATATCCTCGCACGAGGATATGCCCATTCCTTTTAAAACCTGCTTC
GCGGGCGAACTTGGCCTTTCGGGCGAAATAAGAGCTGTGAACCGTGTGGAGCAGCGCATTGCCGAGGCGCAGAAACTCGG
CTTTAACCAGATCTACATCTCCAAATACAATCTCCCTGCCAGCGGGCAGGATAAAAAGCGGATGGATCTTTCGCGCTATG
ATATCGACATCAAAATAGTTAGCACTATCGAAGAGGTGTTTAGTTTGTTGTTTGGATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-230)

Subunit ChlI of Mg-chelatase (ChlI)

(351-437)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A494W2H1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.846

93.644

0.504
  radA Streptococcus pneumoniae Rx1

50.106

100

0.502
  radA Streptococcus pneumoniae D39

50.106

100

0.502
  radA Streptococcus pneumoniae R6

50.106

100

0.502
  radA Streptococcus pneumoniae TIGR4

50.106

100

0.502
  radA Streptococcus mitis NCTC 12261

50.106

100

0.502
  radA Streptococcus mitis SK321

49.894

100

0.5

Multiple sequence alignment