Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   FDN00_RS18925 Genome accession   NZ_CP040084
Coordinates   3942036..3942776 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   V5V999
Organism   Acinetobacter baumannii strain VB33071     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3937036..3947776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDN00_RS18905 (FDN00_18905) aroB 3937573..3938655 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  FDN00_RS18910 (FDN00_18910) aroK 3938684..3939253 (-) 570 WP_000643712.1 shikimate kinase AroK -
  FDN00_RS18915 (FDN00_18915) pilQ 3939265..3941430 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  FDN00_RS18920 (FDN00_18920) pilP 3941498..3942025 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  FDN00_RS18925 (FDN00_18925) pilO 3942036..3942776 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  FDN00_RS18930 (FDN00_18930) pilN 3942773..3943414 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  FDN00_RS18935 (FDN00_18935) pilM 3943414..3944472 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  FDN00_RS18940 (FDN00_18940) ponA 3944635..3947190 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  FDN00_RS18945 (FDN00_18945) - 3947174..3947746 (-) 573 Protein_3694 methyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=319587 FDN00_RS18925 WP_000076101.1 3942036..3942776(-) (pilO) [Acinetobacter baumannii strain VB33071]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=319587 FDN00_RS18925 WP_000076101.1 3942036..3942776(-) (pilO) [Acinetobacter baumannii strain VB33071]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5V999

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO/pilO Acinetobacter baylyi ADP1

69.421

98.374

0.683