Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   D9C14_RS05110 Genome accession   NZ_CP032860
Coordinates   968239..969630 (-) Length   463 a.a.
NCBI ID   WP_038427948.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SSJ-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 963239..974630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C14_RS05075 (D9C14_05075) flgL 963410..964306 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  D9C14_RS05080 (D9C14_05080) flgK 964317..965840 (-) 1524 WP_015714798.1 flagellar hook-associated protein FlgK -
  D9C14_RS05085 (D9C14_05085) flgN 965859..966341 (-) 483 WP_003227999.1 flagellar protein FlgN -
  D9C14_RS05090 (D9C14_05090) flgM 966357..966623 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  D9C14_RS05095 (D9C14_05095) yvyF 966704..967123 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  D9C14_RS05100 (D9C14_05100) comFC 967197..967919 (-) 723 WP_038427947.1 comF operon protein ComFC Machinery gene
  D9C14_RS05105 (D9C14_05105) comFB 967883..968179 (-) 297 WP_015483764.1 late competence protein ComFB -
  D9C14_RS05110 (D9C14_05110) comFA 968239..969630 (-) 1392 WP_038427948.1 ATP-dependent helicase ComFA Machinery gene
  D9C14_RS05115 (D9C14_05115) fakBA 969736..970581 (-) 846 WP_003244125.1 DegV family protein -
  D9C14_RS05120 (D9C14_05120) degU 970679..971368 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  D9C14_RS05125 (D9C14_05125) degS 971451..972608 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  D9C14_RS05130 (D9C14_05130) yvyE 972825..973478 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52577.64 Da        Isoelectric Point: 10.0393

>NTDB_id=319466 D9C14_RS05110 WP_038427948.1 968239..969630(-) (comFA) [Bacillus subtilis subsp. subtilis strain SSJ-1]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=319466 D9C14_RS05110 WP_038427948.1 968239..969630(-) (comFA) [Bacillus subtilis subsp. subtilis strain SSJ-1]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGAAGTCTATTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCGCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCATTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGTCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

99.568

100

0.996

Multiple sequence alignment