Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   D9C14_RS05100 Genome accession   NZ_CP032860
Coordinates   967197..967919 (-) Length   240 a.a.
NCBI ID   WP_038427947.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SSJ-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 962197..972919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C14_RS05065 (D9C14_05065) fliW 962336..962767 (-) 432 WP_029725990.1 flagellar assembly protein FliW -
  D9C14_RS05070 (D9C14_05070) yviE 962788..963363 (-) 576 WP_014481045.1 DUF6470 family protein -
  D9C14_RS05075 (D9C14_05075) flgL 963410..964306 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  D9C14_RS05080 (D9C14_05080) flgK 964317..965840 (-) 1524 WP_015714798.1 flagellar hook-associated protein FlgK -
  D9C14_RS05085 (D9C14_05085) flgN 965859..966341 (-) 483 WP_003227999.1 flagellar protein FlgN -
  D9C14_RS05090 (D9C14_05090) flgM 966357..966623 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  D9C14_RS05095 (D9C14_05095) yvyF 966704..967123 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  D9C14_RS05100 (D9C14_05100) comFC 967197..967919 (-) 723 WP_038427947.1 comF operon protein ComFC Machinery gene
  D9C14_RS05105 (D9C14_05105) comFB 967883..968179 (-) 297 WP_015483764.1 late competence protein ComFB -
  D9C14_RS05110 (D9C14_05110) comFA 968239..969630 (-) 1392 WP_038427948.1 ATP-dependent helicase ComFA Machinery gene
  D9C14_RS05115 (D9C14_05115) fakBA 969736..970581 (-) 846 WP_003244125.1 DegV family protein -
  D9C14_RS05120 (D9C14_05120) degU 970679..971368 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  D9C14_RS05125 (D9C14_05125) degS 971451..972608 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27424.72 Da        Isoelectric Point: 9.4911

>NTDB_id=319465 D9C14_RS05100 WP_038427947.1 967197..967919(-) (comFC) [Bacillus subtilis subsp. subtilis strain SSJ-1]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKVYPDKQFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=319465 D9C14_RS05100 WP_038427947.1 967197..967919(-) (comFC) [Bacillus subtilis subsp. subtilis strain SSJ-1]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCTCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCAGTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTATC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment