Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   D9C12_RS14620 Genome accession   NZ_CP032857
Coordinates   2721572..2721907 (+) Length   111 a.a.
NCBI ID   WP_121509422.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain 2RL2-3     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2716572..2726907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C12_RS14600 (D9C12_14600) gcvT 2717165..2718253 (-) 1089 WP_017696204.1 glycine cleavage system aminomethyltransferase GcvT -
  D9C12_RS14605 (D9C12_14605) hepAA 2718694..2720367 (+) 1674 WP_038829735.1 SNF2-related protein -
  D9C12_RS14610 (D9C12_14610) yqhG 2720388..2721182 (+) 795 WP_014480249.1 YqhG family protein -
  D9C12_RS14615 (D9C12_14615) sinI 2721365..2721538 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  D9C12_RS14620 (D9C12_14620) sinR 2721572..2721907 (+) 336 WP_121509422.1 transcriptional regulator SinR Regulator
  D9C12_RS14625 (D9C12_14625) tasA 2722000..2722785 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  D9C12_RS14630 (D9C12_14630) sipW 2722849..2723421 (-) 573 WP_003230181.1 signal peptidase I SipW -
  D9C12_RS14635 (D9C12_14635) tapA 2723405..2724166 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  D9C12_RS14640 (D9C12_14640) yqzG 2724438..2724764 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  D9C12_RS14645 (D9C12_14645) spoIITA 2724806..2724985 (-) 180 WP_014480252.1 YqzE family protein -
  D9C12_RS14650 (D9C12_14650) comGG 2725056..2725430 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  D9C12_RS14655 (D9C12_14655) comGF 2725431..2725814 (-) 384 WP_029317913.1 ComG operon protein ComGF Machinery gene
  D9C12_RS14660 (D9C12_14660) comGE 2725840..2726187 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  D9C12_RS14665 (D9C12_14665) comGD 2726171..2726602 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  D9C12_RS14670 (D9C12_14670) comGC 2726592..2726888 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12969.60 Da        Isoelectric Point: 6.7316

>NTDB_id=319415 D9C12_RS14620 WP_121509422.1 2721572..2721907(+) (sinR) [Bacillus subtilis subsp. subtilis strain 2RL2-3]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVHDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=319415 D9C12_RS14620 WP_121509422.1 2721572..2721907(+) (sinR) [Bacillus subtilis subsp. subtilis strain 2RL2-3]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCACGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment