Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   D9C10_RS22155 Genome accession   NZ_CP032853
Coordinates   4106280..4107428 (+) Length   382 a.a.
NCBI ID   WP_014475800.1    Uniprot ID   A0A0D1KXJ1
Organism   Bacillus subtilis subsp. subtilis strain MH-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 4101280..4112428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C10_RS22135 (D9C10_22135) yclH 4101657..4102337 (-) 681 WP_014478826.1 ABC transporter ATP-binding protein -
  D9C10_RS22140 (D9C10_22140) yclI 4102353..4103813 (-) 1461 WP_103330346.1 ABC transporter permease -
  D9C10_RS22145 (D9C10_22145) yclJ 4104026..4104709 (+) 684 WP_003246532.1 two-component system response regulator YclJ -
  D9C10_RS22150 (D9C10_22150) yclK 4104696..4106117 (+) 1422 WP_072173981.1 two-component system sensor histidine kinase YclK -
  D9C10_RS22155 (D9C10_22155) rapC 4106280..4107428 (+) 1149 WP_014475800.1 response regulator aspartate phosphatase RapC Regulator
  D9C10_RS22160 (D9C10_22160) phrC 4107412..4107534 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  D9C10_RS22165 (D9C10_22165) yczM 4107633..4107722 (-) 90 WP_015482794.1 YjcZ family sporulation protein -
  D9C10_RS22170 (D9C10_22170) yczN 4107804..4107917 (-) 114 WP_014478831.1 YjcZ family sporulation protein -
  D9C10_RS22175 (D9C10_22175) thrD 4108070..4109434 (-) 1365 WP_021481755.1 aspartate kinase -
  D9C10_RS22180 (D9C10_22180) ceuB 4109825..4110775 (+) 951 WP_014475804.1 petrobactin ABC transporter permease YclN Machinery gene
  D9C10_RS22185 (D9C10_22185) yclO 4110768..4111715 (+) 948 WP_121549314.1 petrobactin ABC transporter permease YclO -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45649.65 Da        Isoelectric Point: 4.9618

>NTDB_id=319288 D9C10_RS22155 WP_014475800.1 4106280..4107428(+) (rapC) [Bacillus subtilis subsp. subtilis strain MH-1]
MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=319288 D9C10_RS22155 WP_014475800.1 4106280..4107428(+) (rapC) [Bacillus subtilis subsp. subtilis strain MH-1]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAGATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAATTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTTTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCCTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAGTGCCATTT
CGTGTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCAACATGGCCC
AAGCGGAACAAAAAGCCCAGCTGGTTGGAAGAGCATACTACAATCTCGGATTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTCCACATTTGAAAGCAGCAGGATCGTCAATTCTCTCCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACAGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAATACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KXJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

99.738

100

0.997
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568

Multiple sequence alignment