Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   D9C10_RS10755 Genome accession   NZ_CP032853
Coordinates   1951543..1951878 (+) Length   111 a.a.
NCBI ID   WP_121548932.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain MH-1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1946543..1956878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C10_RS10735 (D9C10_10735) gcvT 1947135..1948223 (-) 1089 WP_014480247.1 glycine cleavage system aminomethyltransferase GcvT -
  D9C10_RS10740 (D9C10_10740) hepAA 1948665..1950338 (+) 1674 WP_014480248.1 SNF2-related protein -
  D9C10_RS10745 (D9C10_10745) yqhG 1950359..1951153 (+) 795 WP_014480249.1 YqhG family protein -
  D9C10_RS10750 (D9C10_10750) sinI 1951336..1951509 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  D9C10_RS10755 (D9C10_10755) sinR 1951543..1951878 (+) 336 WP_121548932.1 transcriptional regulator SinR Regulator
  D9C10_RS10760 (D9C10_10760) tasA 1951971..1952756 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  D9C10_RS10765 (D9C10_10765) sipW 1952820..1953392 (-) 573 WP_003230181.1 signal peptidase I SipW -
  D9C10_RS10770 (D9C10_10770) tapA 1953376..1954137 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  D9C10_RS10775 (D9C10_10775) yqzG 1954409..1954735 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  D9C10_RS10780 (D9C10_10780) spoIITA 1954777..1954956 (-) 180 WP_014480252.1 YqzE family protein -
  D9C10_RS10785 (D9C10_10785) comGG 1955027..1955401 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  D9C10_RS10790 (D9C10_10790) comGF 1955402..1955785 (-) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  D9C10_RS10795 (D9C10_10795) comGE 1955811..1956158 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  D9C10_RS10800 (D9C10_10800) comGD 1956142..1956573 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  D9C10_RS10805 (D9C10_10805) comGC 1956563..1956859 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12987.66 Da        Isoelectric Point: 8.3802

>NTDB_id=319241 D9C10_RS10755 WP_121548932.1 1951543..1951878(+) (sinR) [Bacillus subtilis subsp. subtilis strain MH-1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRNAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=319241 D9C10_RS10755 WP_121548932.1 1951543..1951878(+) (sinR) [Bacillus subtilis subsp. subtilis strain MH-1]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCAATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment