Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   E8N02_RS06450 Genome accession   NZ_CP040015
Coordinates   1257556..1258422 (-) Length   288 a.a.
NCBI ID   WP_002852840.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain LDG17f     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1252556..1263422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8N02_RS06430 (E8N02_06495) metF 1254409..1255257 (+) 849 WP_002856017.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  E8N02_RS06435 (E8N02_06500) - 1255279..1255470 (-) 192 WP_002852856.1 membrane protein -
  E8N02_RS06440 (E8N02_06505) atpB 1255467..1256147 (-) 681 WP_002908551.1 F0F1 ATP synthase subunit A -
  E8N02_RS06445 (E8N02_06510) radA 1256216..1257556 (-) 1341 WP_002859284.1 DNA repair protein RadA Machinery gene
  E8N02_RS06450 (E8N02_06515) pilA 1257556..1258422 (-) 867 WP_002852840.1 signal recognition particle-docking protein FtsY Machinery gene
  E8N02_RS06455 (E8N02_06520) - 1258422..1258979 (-) 558 WP_002934721.1 TlpA disulfide reductase family protein -
  E8N02_RS06460 (E8N02_06525) - 1259062..1259688 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  E8N02_RS06465 (E8N02_06530) rny 1259609..1261162 (+) 1554 WP_002860440.1 ribonuclease Y -
  E8N02_RS06470 (E8N02_06535) - 1261171..1261728 (+) 558 WP_002852823.1 DedA family protein -
  E8N02_RS06475 (E8N02_06540) - 1261728..1262987 (+) 1260 WP_002934723.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32036.03 Da        Isoelectric Point: 5.5179

>NTDB_id=319225 E8N02_RS06450 WP_002852840.1 1257556..1258422(-) (pilA) [Campylobacter jejuni subsp. jejuni strain LDG17f]
MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=319225 E8N02_RS06450 WP_002852840.1 1257556..1258422(-) (pilA) [Campylobacter jejuni subsp. jejuni strain LDG17f]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGGATTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAACTTGCTTATTTATA
TAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAACAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCCCATGAGCT
TGAAAAAATTGTGAGAATTTCAAACAAAGCTTTAGAAGGTGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAGTGCTTATTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.254

100

0.434