Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E8N02_RS06445 Genome accession   NZ_CP040015
Coordinates   1256216..1257556 (-) Length   446 a.a.
NCBI ID   WP_002859284.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain LDG17f     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1251216..1262556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8N02_RS06420 (E8N02_06485) - 1251353..1252123 (+) 771 WP_002934717.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  E8N02_RS06425 (E8N02_06490) metE 1252135..1254399 (+) 2265 WP_178895690.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  E8N02_RS06430 (E8N02_06495) metF 1254409..1255257 (+) 849 WP_002856017.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  E8N02_RS06435 (E8N02_06500) - 1255279..1255470 (-) 192 WP_002852856.1 membrane protein -
  E8N02_RS06440 (E8N02_06505) atpB 1255467..1256147 (-) 681 WP_002908551.1 F0F1 ATP synthase subunit A -
  E8N02_RS06445 (E8N02_06510) radA 1256216..1257556 (-) 1341 WP_002859284.1 DNA repair protein RadA Machinery gene
  E8N02_RS06450 (E8N02_06515) pilA 1257556..1258422 (-) 867 WP_002852840.1 signal recognition particle-docking protein FtsY Machinery gene
  E8N02_RS06455 (E8N02_06520) - 1258422..1258979 (-) 558 WP_002934721.1 TlpA disulfide reductase family protein -
  E8N02_RS06460 (E8N02_06525) - 1259062..1259688 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  E8N02_RS06465 (E8N02_06530) rny 1259609..1261162 (+) 1554 WP_002860440.1 ribonuclease Y -
  E8N02_RS06470 (E8N02_06535) - 1261171..1261728 (+) 558 WP_002852823.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49024.91 Da        Isoelectric Point: 6.9288

>NTDB_id=319224 E8N02_RS06445 WP_002859284.1 1256216..1257556(-) (radA) [Campylobacter jejuni subsp. jejuni strain LDG17f]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVLKELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIIDSIQTLYSNKVTSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=319224 E8N02_RS06445 WP_002859284.1 1256216..1257556(-) (radA) [Campylobacter jejuni subsp. jejuni strain LDG17f]
ATGGCAAAAAATAAAGCACTTTTTGAATGTCAAGCTTGTGGAAATCAACAAAGCAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTGTAGAATTAAAAGCTGAGCAAATTAAAGTTTTAAAAGAGCTTGCGCAAGTTAGTATGAAAA
CAAGTGAAGCTGTTTGTATTGAAGATGTGGAATTAGAACATTTTACAAGATATAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGAGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACGCTTTTGTT
AAAAATTGCTTCAAATTTAGCCAAACAGGGTAAAAAAGTGCTTTATGTCAGTGGCGAAGAAAGTAAAGCTCAGATTAAAT
TAAGAGCTGATCGCCTTGAGGCCAATACTCCGAATTTATTTTTACTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTACATAAAAAGGATTATAGTATTCTTATCATTGATTCTATACAAACTCTATATTCAAATAAAGTCACTTCAGCAGCAGG
AAGCATCACTCAGGTGCGTGAGATTACTTTCGAACTTATGCGTGTTAGCAAGGCTTATAATATCAGTACTTTTATCATAG
GGCATATTACTAAAGAAGGTGCTATAGCAGGGCCTAGGGTTCTTGAGCATATGGTAGATGTGGTGCTTTATTTTGAAGGA
GATGCCACTAAAGAAATCAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACGAATGAAGTAGGTATTTTTGAGAT
GACTGCTAAGGGTTTGATTAGCGCAAAAGATTTAGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGGGTTGTGATGGAAGGATCTCGTGCTTTGGTTTTAGAAGTTCAAGCTTTAGTGTGTGAAAGTTCTTATCCAAAACGC
AGCGCTACAGGATATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAGCTTGAAATTCCTTTAGGGCA
TTATGATGTATTTGTAAATATTAGCGGTGGGGTAAAAGTAAGTGAAACTGCTGCGGATTTGGCTGTGGTTGCTGCGATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGCAAAGATAGTATTTTTATAGGAGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCTATTGTTCCTTCTAAGCCTTTGGA
AGATATAGGACTTAAGTGTTTTGTTGCTAAAGAACTTTCACAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(71-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

45.861

100

0.46
  radA Streptococcus pneumoniae Rx1

45.861

100

0.46
  radA Streptococcus pneumoniae D39

45.861

100

0.46
  radA Streptococcus pneumoniae TIGR4

45.861

100

0.46
  radA Streptococcus mitis SK321

45.843

99.776

0.457
  radA Streptococcus mitis NCTC 12261

45.843

99.776

0.457
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.437

97.534

0.453