Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   D9C09_RS16865 Genome accession   NZ_CP032852
Coordinates   3156231..3157301 (-) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis subsp. subtilis strain GFR-12     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3151231..3162301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C09_RS16820 (D9C09_16820) tapA 3151710..3152471 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  D9C09_RS16825 (D9C09_16825) yqzG 3152743..3153069 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  D9C09_RS16830 (D9C09_16830) spoIITA 3153111..3153290 (-) 180 WP_014480252.1 YqzE family protein -
  D9C09_RS16835 (D9C09_16835) comGG 3153361..3153735 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  D9C09_RS16840 (D9C09_16840) comGF 3153736..3154119 (-) 384 WP_029317913.1 ComG operon protein ComGF Machinery gene
  D9C09_RS16845 (D9C09_16845) comGE 3154145..3154492 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  D9C09_RS16850 (D9C09_16850) comGD 3154476..3154907 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  D9C09_RS16855 (D9C09_16855) comGC 3154897..3155193 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  D9C09_RS16860 (D9C09_16860) comGB 3155207..3156244 (-) 1038 WP_031600685.1 comG operon protein ComGB Machinery gene
  D9C09_RS16865 (D9C09_16865) comGA 3156231..3157301 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  D9C09_RS16870 (D9C09_16870) - 3157513..3157710 (-) 198 WP_014480259.1 CBS domain-containing protein -
  D9C09_RS16875 (D9C09_16875) corA 3157712..3158665 (-) 954 WP_014480260.1 magnesium transporter CorA -
  D9C09_RS16880 (D9C09_16880) yqhB 3158807..3160135 (+) 1329 WP_014480261.1 hemolysin family protein -
  D9C09_RS16885 (D9C09_16885) rsbRD 3160188..3161024 (-) 837 WP_014480262.1 RsbT co-antagonist protein RsbRD -
  D9C09_RS16895 (D9C09_16895) mgsR 3161248..3161628 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  D9C09_RS16900 (D9C09_16900) yqgY 3161860..3162105 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -
  D9C09_RS22580 - 3162106..3162246 (+) 141 WP_155118966.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=319195 D9C09_RS16865 WP_004399124.1 3156231..3157301(-) (comGA) [Bacillus subtilis subsp. subtilis strain GFR-12]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=319195 D9C09_RS16865 WP_004399124.1 3156231..3157301(-) (comGA) [Bacillus subtilis subsp. subtilis strain GFR-12]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAAGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGGCTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCAACTGGTTCAGGGAAGACTACCACACTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATTGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGTCGCCAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGGAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment