Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | D5S13_RS09585 | Genome accession | NZ_CP032821 |
| Coordinates | 1947698..1948093 (+) | Length | 131 a.a. |
| NCBI ID | WP_000932694.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain JDFM SA01 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1942698..1953093
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D5S13_RS09555 (D5S13_01829) | - | 1943900..1944304 (+) | 405 | WP_001094394.1 | F0F1 ATP synthase subunit epsilon | - |
| D5S13_RS09560 | - | 1944699..1944791 (+) | 93 | WP_001790611.1 | hypothetical protein | - |
| D5S13_RS09565 (D5S13_01830) | - | 1944923..1945156 (+) | 234 | WP_000384523.1 | DUF1146 family protein | - |
| D5S13_RS09570 (D5S13_01831) | murA | 1945267..1946532 (+) | 1266 | WP_000358006.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| D5S13_RS09575 (D5S13_01832) | fabZ | 1946566..1947006 (+) | 441 | WP_000447678.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| D5S13_RS09580 (D5S13_01833) | - | 1947064..1947504 (-) | 441 | WP_000846746.1 | YwpF-like family protein | - |
| D5S13_RS09585 (D5S13_01834) | ssb | 1947698..1948093 (+) | 396 | WP_000932694.1 | single-stranded DNA-binding protein | Machinery gene |
| D5S13_RS09590 (D5S13_01835) | sceD | 1948482..1949177 (+) | 696 | WP_000752001.1 | lytic transglycosylase SceD | - |
| D5S13_RS09595 (D5S13_01836) | tenA | 1949563..1950252 (+) | 690 | WP_000396067.1 | thiaminase II | - |
| D5S13_RS09600 (D5S13_01837) | thiD | 1950245..1951075 (+) | 831 | WP_000594960.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| D5S13_RS09605 (D5S13_01838) | thiM | 1951059..1951850 (+) | 792 | WP_001108482.1 | hydroxyethylthiazole kinase | - |
| D5S13_RS09610 (D5S13_01839) | thiE | 1951852..1952493 (+) | 642 | WP_000483156.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15042.09 Da Isoelectric Point: 5.6824
>NTDB_id=318979 D5S13_RS09585 WP_000932694.1 1947698..1948093(+) (ssb) [Staphylococcus aureus strain JDFM SA01]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI
Nucleotide
Download Length: 396 bp
>NTDB_id=318979 D5S13_RS09585 WP_000932694.1 1947698..1948093(+) (ssb) [Staphylococcus aureus strain JDFM SA01]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
100 |
100 |
1 |
| ssb | Staphylococcus aureus MW2 |
99.237 |
100 |
0.992 |