Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   D5S13_RS01405 Genome accession   NZ_CP032821
Coordinates   291172..291741 (+) Length   189 a.a.
NCBI ID   WP_000287265.1    Uniprot ID   A0A7U7EXU5
Organism   Staphylococcus aureus strain JDFM SA01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 286172..296741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5S13_RS01370 - 287383..287655 (-) 273 WP_072470685.1 lactococcin 972 family bacteriocin -
  D5S13_RS01375 - 287665..287766 (-) 102 WP_001790623.1 hypothetical protein -
  D5S13_RS13830 - 288305..288382 (-) 78 WP_099112139.1 putative holin-like toxin -
  D5S13_RS01385 (D5S13_00265) - 288685..289287 (-) 603 WP_001033867.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  D5S13_RS01390 (D5S13_00266) - 289302..289478 (-) 177 WP_000214898.1 YkvS family protein -
  D5S13_RS01395 (D5S13_00267) - 289677..290663 (+) 987 WP_000668815.1 lipoate--protein ligase -
  D5S13_RS01400 (D5S13_00268) - 290744..290962 (-) 219 WP_000876826.1 IDEAL domain-containing protein -
  D5S13_RS01405 (D5S13_00269) comK/comK1 291172..291741 (+) 570 WP_000287265.1 competence protein ComK Regulator
  D5S13_RS01420 (D5S13_00272) - 292228..293739 (-) 1512 WP_031866180.1 bifunctional metallophosphatase/5'-nucleotidase -
  D5S13_RS01425 (D5S13_00273) - 293878..295236 (-) 1359 WP_000021865.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22601.83 Da        Isoelectric Point: 9.6091

>NTDB_id=318963 D5S13_RS01405 WP_000287265.1 291172..291741(+) (comK/comK1) [Staphylococcus aureus strain JDFM SA01]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=318963 D5S13_RS01405 WP_000287265.1 291172..291741(+) (comK/comK1) [Staphylococcus aureus strain JDFM SA01]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
TGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EXU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

100

100

1
  comK/comK1 Staphylococcus aureus N315

100

100

1

Multiple sequence alignment