Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   FC629_RS12820 Genome accession   NZ_CP039988
Coordinates   2697606..2698250 (+) Length   214 a.a.
NCBI ID   WP_003090351.1    Uniprot ID   A0A0H2ZC55
Organism   Pseudomonas aeruginosa strain T2436     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2692606..2703250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FC629_RS12805 (FC629_13150) - 2693240..2694454 (+) 1215 WP_128622991.1 MFS transporter -
  FC629_RS12810 (FC629_13155) - 2694470..2695498 (-) 1029 WP_031636083.1 AraC family transcriptional regulator -
  FC629_RS12815 (FC629_13160) pqsH 2696116..2697264 (+) 1149 WP_128622992.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  FC629_RS12820 (FC629_13170) letA 2697606..2698250 (+) 645 WP_003090351.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  FC629_RS12825 (FC629_13175) uvrC 2698251..2700077 (+) 1827 WP_116819924.1 excinuclease ABC subunit UvrC -
  FC629_RS12830 (FC629_13180) pgsA 2700111..2700671 (+) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FC629_RS12840 (FC629_13190) - 2701553..2702413 (-) 861 WP_226341673.1 fimbrial protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23608.53 Da        Isoelectric Point: 6.1073

>NTDB_id=318872 FC629_RS12820 WP_003090351.1 2697606..2698250(+) (letA) [Pseudomonas aeruginosa strain T2436]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=318872 FC629_RS12820 WP_003090351.1 2697606..2698250(+) (letA) [Pseudomonas aeruginosa strain T2436]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAACTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCCTGGAGGCAACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGATCCGTTCCCCACCCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCGATTCGCCAGGTCTTCGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACCG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAGCTGGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZC55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.502

98.598

0.537
  letA Legionella pneumophila strain ERS1305867

54.502

98.598

0.537

Multiple sequence alignment