Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CFBP7129_RS06005 Genome accession   NZ_CP039922
Coordinates   1173270..1173848 (-) Length   192 a.a.
NCBI ID   WP_164865307.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain CFBP7129     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1168270..1178848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP7129_RS05990 (CFBP7129_05990) gyrA 1168279..1171071 (-) 2793 WP_137003529.1 DNA gyrase subunit A -
  CFBP7129_RS05995 (CFBP7129_05995) - 1171289..1171918 (+) 630 WP_003525062.1 MarC family protein -
  CFBP7129_RS06000 (CFBP7129_06000) - 1172051..1173199 (+) 1149 WP_137003530.1 HPP family protein -
  CFBP7129_RS06005 (CFBP7129_06005) ssb 1173270..1173848 (-) 579 WP_164865307.1 single-stranded DNA-binding protein Machinery gene
  CFBP7129_RS06010 (CFBP7129_06010) uvrA 1174113..1177034 (+) 2922 WP_137003531.1 excinuclease ABC subunit UvrA Machinery gene
  CFBP7129_RS06015 (CFBP7129_06015) - 1177091..1177891 (+) 801 WP_127756011.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 20585.45 Da        Isoelectric Point: 4.7391

>NTDB_id=318587 CFBP7129_RS06005 WP_164865307.1 1173270..1173848(-) (ssb) [Agrobacterium tumefaciens strain CFBP7129]
MQLPVMMAGGQDDEMAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCK
VVEQYVKKGAKLYIEGQLQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGEGGGRSGGDFGGGNDYGSGGGSSYGGGY
DQQSSSRGGSSRSGGGQPSGGFSNDMDDDIPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=318587 CFBP7129_RS06005 WP_164865307.1 1173270..1173848(-) (ssb) [Agrobacterium tumefaciens strain CFBP7129]
ATGCAATTGCCGGTCATGATGGCCGGCGGACAGGATGACGAGATGGCTGGTAGCGTAAACAAGGTAATTCTGATCGGGAA
CGTGGGCGCCGATCCCGAAATCCGCCGGACGCAGGATGGCCGCCCCATCGCCAATCTGCGCATTGCCACCTCGGAGACCT
GGCGGGACCGTAACAGCGGCGAGCGCCGCGAAAAGACCGAATGGCACACCGTCGTCGTCTTCAACGAAGGCCTGTGCAAG
GTCGTCGAGCAATATGTCAAGAAGGGCGCCAAGCTCTATATTGAAGGCCAGCTGCAGACGCGCAAATGGCAGGACCAGAC
CGGCAACGACCGTTACTCCACCGAAATCGTGCTGCAGGGTTTCAACTCCACGCTGACGATGCTCGATGGTCGCGGTGAGG
GCGGTGGCCGCAGCGGCGGCGATTTCGGCGGCGGCAATGATTATGGCAGCGGCGGCGGCTCCAGCTATGGCGGTGGTTAC
GACCAGCAGTCCTCGTCGCGCGGCGGCTCTTCCCGTAGCGGCGGCGGCCAGCCTTCCGGCGGCTTCTCCAACGATATGGA
TGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(19-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.361

100

0.458
  ssb Vibrio cholerae strain A1552

49.438

92.708

0.458