Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   CFBP6624_RS04785 Genome accession   NZ_CP039907
Coordinates   936244..937521 (+) Length   425 a.a.
NCBI ID   WP_003521528.1    Uniprot ID   A0A1S7PKG6
Organism   Agrobacterium tumefaciens strain CFBP6624     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 931244..942521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP6624_RS04760 (CFBP6624_04760) - 931580..931966 (-) 387 WP_137084081.1 type II toxin-antitoxin system VapC family toxin -
  CFBP6624_RS04765 (CFBP6624_04765) - 931963..932250 (-) 288 WP_137084083.1 hypothetical protein -
  CFBP6624_RS04770 (CFBP6624_04770) - 932280..933527 (-) 1248 WP_137084085.1 cytochrome P450 -
  CFBP6624_RS04775 (CFBP6624_04775) - 933617..934864 (-) 1248 WP_137084087.1 GGDEF domain-containing protein -
  CFBP6624_RS04780 (CFBP6624_04780) clpP 935319..935951 (+) 633 WP_046800320.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  CFBP6624_RS04785 (CFBP6624_04785) clpX 936244..937521 (+) 1278 WP_003521528.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  CFBP6624_RS04790 (CFBP6624_04790) - 937719..938087 (+) 369 WP_137084089.1 glyoxalase/bleomycin resistance/dioxygenase family protein -
  CFBP6624_RS04800 (CFBP6624_04800) lon 938469..940886 (+) 2418 WP_046800318.1 endopeptidase La -
  CFBP6624_RS04805 (CFBP6624_04805) hupB 941174..941449 (+) 276 WP_003496481.1 DNA-binding protein HupB -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 46897.82 Da        Isoelectric Point: 5.0788

>NTDB_id=318548 CFBP6624_RS04785 WP_003521528.1 936244..937521(+) (clpX) [Agrobacterium tumefaciens strain CFBP6624]
MSKVSGSNGGDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKTSMVKSREGVPTPQDIIKILDEYV
IGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV
ENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV
DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAEDDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDED
ALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARKAITRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISN
DVVSGVARPLYIYADRQEEKTNVSA

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=318548 CFBP6624_RS04785 WP_003521528.1 936244..937521(+) (clpX) [Agrobacterium tumefaciens strain CFBP6624]
ATGAGCAAAGTCAGCGGCAGCAACGGCGGCGACTCTAAGAATACACTCTATTGTTCATTCTGCGGCAAGAGCCAGCACGA
AGTCCGGAAACTCATTGCCGGGCCGACGGTATTCATCTGCGATGAATGCGTCGAATTGTGCATGGACATCATCCGCGAGG
AGAACAAGACATCTATGGTGAAGTCGCGCGAGGGTGTTCCCACCCCGCAGGATATCATCAAGATTCTCGACGAATATGTC
ATCGGTCAGAAGCAGGCGAAGAAAATCCTGTCGGTGGCCGTTCACAACCATTACAAGCGCCTCGCGCACGCCTCCAAGAA
CGGCGATGTCGAGCTGGCGAAGTCGAACATCATGCTCGTCGGTCCGACGGGTTGCGGCAAGACCTATCTTGCCCAGACGC
TCGCCCGCATCATCGACGTTCCCTTCACCATGGCGGACGCAACGACGCTGACCGAAGCCGGTTATGTCGGCGAGGACGTG
GAAAACATCATCCTGAAGCTGTTGCAGGCTGCGGATTACAATGTCGAGCGCGCCCAGCGCGGTATCGTCTATATCGACGA
GGTCGACAAGATTTCCCGCAAGTCGGACAACCCGTCCATCACGCGTGACGTGTCGGGCGAGGGCGTCCAGCAGGCGCTTC
TGAAGATCATGGAAGGCACGGTCGCTTCCGTTCCGCCGCAGGGTGGCCGCAAGCATCCGCAGCAGGAATTCCTGCAGGTG
GATACGACCAACATCCTGTTCATCTGCGGCGGCGCCTTTGCCGGCCTCGACAAGATCATCTCGGCCCGTGGCGAAAAGAC
CTCGATCGGCTTTGGTGCGACCGTCAAGGCGGAAGACGATCGCCGTGTGGGCGAGGTGCTGCGCGAACTGGAGCCGGAAG
ATCTGGTGAAGTTCGGCCTCATTCCGGAATTCATCGGCCGTCTGCCGGTTCTGGCGACGCTGGAAGACCTGGATGAAGAT
GCGCTGATCCAGATCCTGTCCGAGCCGAAGAACGCGCTGGTCAAGCAGTATCAGCGCCTGTTCGAGATGGAAGATGTGGA
ACTGACCTTCCACGAGGACGCACTTCGCGAAATCGCCCGCAAGGCGATTACCCGCAAGACCGGCGCCCGTGGTCTGCGCT
CGATCATGGAAAAGATCCTGCTGGATACCATGTTCGAACTGCCGACGCTGGAAGGCGTGCGCGAAGTGGTGATCTCCAAT
GACGTTGTCAGCGGTGTCGCCCGTCCGCTCTACATCTATGCGGATCGTCAGGAAGAAAAGACCAACGTTTCGGCCTGA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(317-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(114-310)

ClpX C4-type zinc finger (zf-C4_ClpX)

(16-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S7PKG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

62.907

93.882

0.591
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.335

94.824

0.525