Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CFBP6623_RS14085 Genome accession   NZ_CP039903
Coordinates   2832804..2833409 (-) Length   201 a.a.
NCBI ID   WP_046799114.1    Uniprot ID   A0A1S7QQ04
Organism   Agrobacterium tumefaciens strain CFBP6623     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2827804..2838409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP6623_RS14070 (CFBP6623_14070) rimP 2828765..2829361 (-) 597 WP_046799419.1 ribosome maturation factor RimP -
  CFBP6623_RS14075 (CFBP6623_14075) - 2829649..2831277 (+) 1629 WP_080842423.1 MFS transporter -
  CFBP6623_RS14080 (CFBP6623_14080) - 2831442..2832641 (-) 1200 WP_232370438.1 lytic murein transglycosylase -
  CFBP6623_RS14085 (CFBP6623_14085) recR 2832804..2833409 (-) 606 WP_046799114.1 recombination mediator RecR Machinery gene
  CFBP6623_RS14090 (CFBP6623_14090) - 2833447..2834082 (+) 636 WP_046799115.1 MOSC domain-containing protein -
  CFBP6623_RS14095 (CFBP6623_14095) - 2834151..2834474 (-) 324 WP_046799116.1 YbaB/EbfC family nucleoid-associated protein -
  CFBP6623_RS14100 (CFBP6623_14100) - 2834502..2836376 (-) 1875 WP_046799117.1 DNA polymerase III subunit gamma/tau -
  CFBP6623_RS14110 (CFBP6623_14110) - 2836620..2837048 (+) 429 WP_046799118.1 HIT family protein -
  CFBP6623_RS14115 (CFBP6623_14115) nudC 2837051..2838010 (+) 960 WP_046799420.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21441.80 Da        Isoelectric Point: 6.3321

>NTDB_id=318535 CFBP6623_RS14085 WP_046799114.1 2832804..2833409(-) (recR) [Agrobacterium tumefaciens strain CFBP6623]
MAKRVTGPEIEKLIQLLAKVPGLGPRSARRAALHLIKKKEQLLGPLGHAMSEAYDKVKICSCCGNVDTIDPCTVCADDRR
DQSVIIVVEDVSDLWALERAGAMNTAYHVLGGTLSPLDGVGPEDLNIKGLIDRVSVGGIRELIIAVNATVEGQATAHYIT
DRLSDLGIKITRLAHGVPVGGELDYLDEGTLTAALRARTTI

Nucleotide


Download         Length: 606 bp        

>NTDB_id=318535 CFBP6623_RS14085 WP_046799114.1 2832804..2833409(-) (recR) [Agrobacterium tumefaciens strain CFBP6623]
ATGGCAAAACGAGTCACCGGTCCGGAAATCGAAAAACTGATCCAGCTTCTGGCAAAAGTGCCGGGACTTGGCCCCCGCTC
GGCGCGGCGGGCGGCGCTGCATCTCATCAAGAAGAAGGAGCAGCTTCTCGGGCCGCTGGGCCACGCGATGAGCGAGGCCT
ATGACAAGGTGAAAATCTGCTCCTGCTGCGGCAATGTCGACACCATCGATCCCTGCACCGTCTGCGCCGACGACCGGCGC
GACCAGTCAGTCATCATCGTTGTCGAGGACGTCTCGGATCTATGGGCGTTGGAACGGGCGGGCGCCATGAACACCGCCTA
TCATGTGCTGGGCGGCACGCTATCGCCGCTCGACGGTGTCGGGCCGGAAGATTTGAACATCAAGGGGCTGATCGACCGCG
TCAGCGTCGGTGGCATTCGCGAGCTTATCATCGCCGTCAATGCGACAGTTGAGGGGCAGGCAACCGCCCACTATATCACC
GACCGTCTCTCCGATCTCGGCATCAAGATCACCCGGCTTGCGCATGGGGTGCCGGTGGGCGGCGAGCTGGACTATCTCGA
CGAAGGCACATTGACGGCGGCGCTTCGGGCCCGCACGACGATCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(45-81)

Toprim domain (Toprim_4)

(83-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S7QQ04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.907

96.517

0.453
  recR Bacillus subtilis subsp. subtilis str. 168

45.833

95.522

0.438
  recR Streptococcus pneumoniae R6

39.062

95.522

0.373

Multiple sequence alignment