Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LP314_RS00055 | Genome accession | NZ_CP032757 |
| Coordinates | 11048..11641 (+) | Length | 197 a.a. |
| NCBI ID | WP_050338058.1 | Uniprot ID | A0A241RQ54 |
| Organism | Lactiplantibacillus pentosus strain DSM 20314 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 6048..16641
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LP314_RS00035 (LP314_00035) | gyrA | 6991..9543 (+) | 2553 | WP_050338355.1 | DNA gyrase subunit A | - |
| LP314_RS00050 (LP314_00050) | rpsF | 10712..11011 (+) | 300 | WP_003637271.1 | 30S ribosomal protein S6 | - |
| LP314_RS00055 (LP314_00055) | ssb | 11048..11641 (+) | 594 | WP_050338058.1 | single-stranded DNA-binding protein | Machinery gene |
| LP314_RS00060 (LP314_00060) | rpsR | 11680..11916 (+) | 237 | WP_003637273.1 | 30S ribosomal protein S18 | - |
| LP314_RS00065 (LP314_00065) | - | 12093..14105 (+) | 2013 | WP_050338057.1 | DHH family phosphoesterase | - |
| LP314_RS00070 (LP314_00070) | rplI | 14119..14571 (+) | 453 | WP_050338056.1 | 50S ribosomal protein L9 | - |
| LP314_RS00075 (LP314_00075) | dnaB | 14587..16017 (+) | 1431 | WP_050338055.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 21368.79 Da Isoelectric Point: 4.7453
>NTDB_id=318535 LP314_RS00055 WP_050338058.1 11048..11641(+) (ssb) [Lactiplantibacillus pentosus strain DSM 20314]
MINRTILVGRLTRDPELRYTNGGAAVATFTIAVNRQFTNQNGEREADFISCVIWRKAAENFANFTHKGSLVGIDGRIQTR
NYENQQGVRVYVTEVVVENFSLLESRAESERHQAANGGSNNNYNNGNSNYNNNSGYSNQGQNAAPQQSSANNNNPFGNGN
AGNANSAAPSSSANNNQADPFANNGDQIDISDDDLPF
MINRTILVGRLTRDPELRYTNGGAAVATFTIAVNRQFTNQNGEREADFISCVIWRKAAENFANFTHKGSLVGIDGRIQTR
NYENQQGVRVYVTEVVVENFSLLESRAESERHQAANGGSNNNYNNGNSNYNNNSGYSNQGQNAAPQQSSANNNNPFGNGN
AGNANSAAPSSSANNNQADPFANNGDQIDISDDDLPF
Nucleotide
Download Length: 594 bp
>NTDB_id=318535 LP314_RS00055 WP_050338058.1 11048..11641(+) (ssb) [Lactiplantibacillus pentosus strain DSM 20314]
ATGATTAACCGTACAATTCTTGTTGGCCGACTAACAAGAGATCCGGAATTACGTTACACGAATGGTGGTGCCGCCGTCGC
GACATTCACAATTGCCGTAAACCGTCAATTCACGAATCAAAATGGGGAACGTGAAGCAGATTTTATCAGCTGCGTCATCT
GGCGTAAAGCTGCTGAAAACTTTGCTAACTTCACCCATAAAGGCTCGCTTGTTGGAATCGATGGCCGGATTCAAACCCGG
AACTACGAAAACCAACAAGGGGTACGAGTTTACGTTACAGAAGTTGTCGTTGAAAACTTCTCACTACTAGAATCACGTGC
AGAGTCTGAACGTCATCAGGCTGCTAATGGTGGTAGTAATAACAATTACAACAATGGTAATTCGAATTACAACAATAATA
GTGGGTATAGTAATCAAGGCCAAAATGCGGCTCCTCAACAATCATCAGCGAATAACAACAACCCATTTGGGAATGGTAAC
GCCGGTAATGCGAACAGTGCCGCACCATCAAGCAGTGCGAACAATAACCAAGCCGATCCATTTGCGAATAATGGCGATCA
GATTGATATCTCGGATGATGATTTACCATTCTAG
ATGATTAACCGTACAATTCTTGTTGGCCGACTAACAAGAGATCCGGAATTACGTTACACGAATGGTGGTGCCGCCGTCGC
GACATTCACAATTGCCGTAAACCGTCAATTCACGAATCAAAATGGGGAACGTGAAGCAGATTTTATCAGCTGCGTCATCT
GGCGTAAAGCTGCTGAAAACTTTGCTAACTTCACCCATAAAGGCTCGCTTGTTGGAATCGATGGCCGGATTCAAACCCGG
AACTACGAAAACCAACAAGGGGTACGAGTTTACGTTACAGAAGTTGTCGTTGAAAACTTCTCACTACTAGAATCACGTGC
AGAGTCTGAACGTCATCAGGCTGCTAATGGTGGTAGTAATAACAATTACAACAATGGTAATTCGAATTACAACAATAATA
GTGGGTATAGTAATCAAGGCCAAAATGCGGCTCCTCAACAATCATCAGCGAATAACAACAACCCATTTGGGAATGGTAAC
GCCGGTAATGCGAACAGTGCCGCACCATCAAGCAGTGCGAACAATAACCAAGCCGATCCATTTGCGAATAATGGCGATCA
GATTGATATCTCGGATGATGATTTACCATTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
63.452 |
100 |
0.635 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.315 |
100 |
0.543 |