Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AFLV_RS10990 Genome accession   NC_011567
Coordinates   2095326..2097122 (-) Length   598 a.a.
NCBI ID   WP_041638744.1    Uniprot ID   -
Organism   Anoxybacillus flavithermus WK1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2090326..2102122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFLV_RS10950 (Aflv_2114) - 2090505..2091296 (-) 792 WP_012575654.1 NAD kinase -
  AFLV_RS10955 (Aflv_2115) - 2091303..2091941 (-) 639 WP_009362168.1 GTP pyrophosphokinase family protein -
  AFLV_RS10960 (Aflv_2116) - 2091954..2092310 (-) 357 WP_041639354.1 hypothetical protein -
  AFLV_RS10965 (Aflv_2117) - 2092438..2093028 (+) 591 WP_012575656.1 CYTH domain-containing protein -
  AFLV_RS10970 (Aflv_2118) - 2093025..2093633 (+) 609 WP_041638740.1 lytic transglycosylase domain-containing protein -
  AFLV_RS10975 (Aflv_2119) - 2093690..2094094 (+) 405 WP_012575658.1 hypothetical protein -
  AFLV_RS10980 (Aflv_2120) - 2094078..2094890 (+) 813 WP_012575659.1 ClpXP adapter SpxH family protein -
  AFLV_RS15710 (Aflv_2121) - 2095131..2095295 (+) 165 WP_041638742.1 hypothetical protein -
  AFLV_RS10990 (Aflv_2122) pepF 2095326..2097122 (-) 1797 WP_041638744.1 oligoendopeptidase F Regulator
  AFLV_RS10995 (Aflv_2123) - 2097160..2098344 (-) 1185 WP_193330537.1 competence protein CoiA family protein -
  AFLV_RS11000 (Aflv_2124) - 2098647..2099822 (+) 1176 WP_012575663.1 RNA-guided endonuclease TnpB family protein -
  AFLV_RS11005 (Aflv_2125) mecA 2099965..2100630 (+) 666 WP_012575664.1 adaptor protein MecA -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 69626.50 Da        Isoelectric Point: 5.1366

>NTDB_id=31846 AFLV_RS10990 WP_041638744.1 2095326..2097122(-) (pepF) [Anoxybacillus flavithermus WK1]
MAKTLPTRKDVPVEYTWRLEDIFATDEQWEKEFEEIMSLLPKFSEYKGRLGESAQTLYEALQYRDHVFMRLGKLYAYAHM
RHDEDTAHSLYQGLETRAEGLYAEAGQATAFIVPEILAMDEDVLRTFLQQYEPLRLYAHELDEMNRQRPHVLSEKEEALL
AQAAEVMNASSNTFGALNNADLRFPTITDENGEEVEVTHGRYIRFLESEERRVRHDAFKAVYDTYRKYENTFASTLSGAV
KRNNFFARVRNYRSAREAALSKNQIPETVYDNLIETIHRYLPLLHRYVQLRKRVLGLDELHMYDLYTPLVKQVDMKVTYE
EAKDILLKGLTPLGDEYISIVKEGFDNRWVDVQETRGKRSGAYSSGSYGTNPYILMNWQDNVNNLFTLAHEFGHSVHSYY
TRKYQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDEKKKLYLLNHYLETFRGTVFRQTMFAEFEHMIHQMAQNGEAL
TAKVLTEKYYELNKTYFGDGVVIDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGAPAVERYIAFLKAGSS
DYPIEVLKKAGVDMTSPEPIEQACQVFEQKLQQLEQLL

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=31846 AFLV_RS10990 WP_041638744.1 2095326..2097122(-) (pepF) [Anoxybacillus flavithermus WK1]
ATGGCAAAAACGTTGCCGACACGCAAAGACGTTCCGGTAGAGTATACGTGGCGTCTTGAAGATATTTTTGCGACGGATGA
ACAATGGGAGAAAGAATTTGAAGAAATTATGTCGCTTCTTCCGAAATTTTCGGAATATAAAGGTAGGCTCGGAGAAAGTG
CTCAAACGTTATACGAAGCGTTGCAATATCGCGACCATGTGTTCATGCGACTAGGAAAATTATATGCGTACGCACATATG
CGTCATGATGAAGATACGGCTCATTCACTTTATCAAGGATTAGAAACGAGAGCGGAAGGGTTGTATGCGGAAGCAGGTCA
AGCGACGGCGTTTATCGTGCCGGAAATTTTAGCGATGGATGAAGATGTGTTGCGCACGTTTTTACAACAGTACGAGCCGC
TTCGTTTGTATGCGCATGAATTAGATGAAATGAACCGCCAACGTCCGCACGTATTATCGGAAAAAGAAGAAGCGTTGCTT
GCACAGGCGGCGGAAGTGATGAACGCATCAAGCAATACGTTCGGGGCGTTAAATAATGCTGATTTGCGTTTTCCGACGAT
TACAGATGAAAACGGAGAAGAAGTGGAAGTGACGCACGGTCGTTACATTCGTTTTCTCGAAAGCGAAGAACGCCGCGTGC
GCCACGATGCGTTTAAAGCGGTATACGATACATATCGCAAATATGAAAATACGTTTGCGAGCACGTTAAGCGGAGCGGTG
AAGCGCAATAACTTTTTTGCGCGCGTTCGCAACTATCGTTCAGCGCGCGAGGCGGCATTAAGTAAAAACCAAATTCCTGA
AACGGTGTACGATAACTTAATTGAAACGATTCATCGCTATTTGCCACTTTTGCACCGTTACGTTCAATTGCGCAAGCGCG
TGCTCGGATTAGATGAGTTGCATATGTACGATTTATATACGCCGCTTGTCAAACAAGTCGATATGAAAGTGACGTATGAA
GAAGCAAAAGACATATTGTTAAAAGGATTGACGCCACTAGGTGACGAATATATTTCGATCGTGAAAGAAGGGTTTGATAA
CCGTTGGGTTGACGTGCAAGAAACGCGCGGCAAACGAAGTGGAGCATACTCGTCTGGTTCATATGGAACGAACCCGTACA
TTTTAATGAACTGGCAAGATAATGTGAACAACTTATTTACGCTTGCTCACGAGTTTGGCCATTCGGTGCATAGTTACTAT
ACGCGCAAATATCAGCCGTATCCGTACGGAAACTATTCGATTTTCGTCGCGGAAGTCGCATCGACGTGCAACGAAGCGTT
GTTGAACGATTATTTATTAAAAACGATCGATGACGAGAAGAAAAAGTTATATTTATTAAATCATTATTTAGAAACGTTCC
GAGGTACGGTGTTCCGTCAAACGATGTTTGCAGAGTTTGAACATATGATTCATCAAATGGCACAAAACGGGGAAGCGTTG
ACCGCCAAAGTATTGACGGAAAAATATTATGAGCTAAACAAAACGTATTTCGGGGACGGCGTCGTCATCGATGAAGAAAT
CGGCTTAGAATGGGCACGCATTCCGCATTTTTACTACAACTATTATGTGTATCAATATGCGACAGGTTTTAGCGCTGCGA
CTGCATTAAGCAAACAAATTTTAGAAGAGGGCGCACCTGCGGTTGAACGTTACATTGCATTTTTAAAAGCAGGAAGCTCC
GATTATCCAATTGAAGTGTTGAAAAAAGCAGGTGTCGATATGACGTCTCCAGAGCCAATCGAACAAGCGTGCCAAGTGTT
TGAACAAAAACTGCAACAGCTCGAGCAATTGCTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(206-585)

Oligopeptidase F (Peptidase_M3_N)

(115-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.731

98.829

0.482

Multiple sequence alignment