Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | D7A46_RS04025 | Genome accession | NZ_CP032743 |
| Coordinates | 718833..719213 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain C25 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 713833..724213
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D7A46_RS03995 (D7A46_03990) | tadA | 713951..714454 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| D7A46_RS04000 (D7A46_03995) | - | 714461..715585 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| D7A46_RS04005 (D7A46_04000) | ung | 715582..716295 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| D7A46_RS04010 (D7A46_04005) | - | 716346..716942 (-) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| D7A46_RS04015 (D7A46_04010) | gspK | 717173..718132 (-) | 960 | WP_151005191.1 | type II secretion system minor pseudopilin GspK | - |
| D7A46_RS04020 (D7A46_04015) | xcpW | 718132..718833 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| D7A46_RS04025 (D7A46_04020) | xcpV | 718833..719213 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| D7A46_RS04030 (D7A46_04025) | - | 719203..719757 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| D7A46_RS04035 (D7A46_04030) | - | 719767..720375 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| D7A46_RS04040 (D7A46_04035) | - | 720413..721186 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| D7A46_RS04045 (D7A46_04040) | - | 721204..721545 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| D7A46_RS04050 (D7A46_04045) | - | 721557..722537 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| D7A46_RS04055 (D7A46_04050) | kdsB | 722549..723310 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=318436 D7A46_RS04025 WP_000836911.1 718833..719213(-) (xcpV) [Acinetobacter baumannii strain C25]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=318436 D7A46_RS04025 WP_000836911.1 718833..719213(-) (xcpV) [Acinetobacter baumannii strain C25]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |