Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   CFBP5499_RS02480 Genome accession   NZ_CP039888
Coordinates   472125..473957 (-) Length   610 a.a.
NCBI ID   WP_080827452.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain CFBP5499     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 467125..478957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP5499_RS02455 (CFBP5499_02455) - 467787..468026 (+) 240 WP_080825864.1 DUF4170 domain-containing protein -
  CFBP5499_RS02460 (CFBP5499_02460) waaA 468241..469563 (+) 1323 WP_080825862.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CFBP5499_RS02465 (CFBP5499_02465) - 469557..470294 (+) 738 WP_080825860.1 HAD family hydrolase -
  CFBP5499_RS02470 (CFBP5499_02470) lpxK 470531..471571 (+) 1041 WP_080825858.1 tetraacyldisaccharide 4'-kinase -
  CFBP5499_RS02475 (CFBP5499_02475) - 471753..471974 (-) 222 WP_080825855.1 DUF2093 domain-containing protein -
  CFBP5499_RS02480 (CFBP5499_02480) hexB 472125..473957 (-) 1833 WP_080827452.1 DNA mismatch repair endonuclease MutL Machinery gene
  CFBP5499_RS02485 (CFBP5499_02485) - 474366..475985 (+) 1620 WP_175416755.1 response regulator -
  CFBP5499_RS02490 (CFBP5499_02490) - 476072..477424 (+) 1353 WP_080825850.1 EAL domain-containing protein -
  CFBP5499_RS02495 (CFBP5499_02495) - 477487..478374 (-) 888 WP_080825848.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 65626.49 Da        Isoelectric Point: 6.2095

>NTDB_id=318435 CFBP5499_RS02480 WP_080827452.1 472125..473957(-) (hexB) [Agrobacterium tumefaciens strain CFBP5499]
MAIKQLSETLINQIAAGEVIERPSSATKELVENAIDAGATRIEIATAGGGKGLVRITDNGSGMSSTDLELAVRRHCTSKI
STTLDDIRTLGFRGEALPSIGSVAKLSITSRQQGAEQGSVISVTGGKVSDVRPAASNAGTIVEVRDLFFATPARLKFLKT
ERAEAAAITEVVKRMAIAFPHIRFVLSGTDRSTLEIPSTGDDHLARMAQILGADFKDNAIEIDAGREDVTLTGFAGVPTF
NRGNSAHQYVFVNGRPVQDKLLLSAIRGAYAETVPHGRYPVAVLSITLDPAFVDVNVHPAKSDVRFRDPGLIRGLIVGAI
RQALTRDGDRAATTGTSQMMNAFRPGYSPSGLRPSPSMMASAPWSATTSPSRPLAVSGDMQFAEAVQSRFSDITMPTARA
EPREAYEASPGPSPEPLLYPLGAARAQLHENYIIAQTENGLVIVDQHAAHERLVFEEMRNALHSRRPPSQVLLIPEIIDL
PEEDCDRLMDHAAGFDALGLVIERFGPGAIAVRETPAMLGEVNVQGLVRQLADEIAEWDAASTLANKLEYVAATMACHGS
VRSGRRMRPEEMNALLRQMENTPGSGQCNHGRPTYIELKLSDIERLFGRS

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=318435 CFBP5499_RS02480 WP_080827452.1 472125..473957(-) (hexB) [Agrobacterium tumefaciens strain CFBP5499]
ATGGCCATCAAGCAGCTTTCAGAAACCCTCATCAACCAGATCGCCGCCGGCGAGGTCATCGAAAGACCATCCAGCGCCAC
GAAGGAACTCGTCGAAAACGCCATCGACGCGGGCGCGACCCGCATCGAGATCGCCACGGCGGGCGGTGGCAAGGGGCTGG
TGCGCATTACCGATAACGGCTCCGGCATGTCATCCACCGATCTGGAGCTTGCGGTGCGACGCCATTGCACGTCGAAAATA
TCCACGACGCTGGATGATATCCGCACGCTCGGATTTCGCGGCGAGGCGCTGCCCTCCATCGGCTCGGTCGCCAAGCTTTC
GATCACTAGCCGCCAACAGGGTGCGGAACAGGGTTCGGTGATTTCGGTGACGGGCGGCAAGGTTTCGGACGTGCGGCCGG
CCGCCTCCAATGCCGGCACCATCGTCGAGGTGCGCGACCTCTTCTTCGCCACGCCGGCACGGCTGAAATTCCTGAAGACG
GAACGGGCGGAGGCAGCCGCCATCACCGAGGTCGTCAAGCGGATGGCGATCGCCTTTCCGCATATCCGCTTCGTGCTCTC
GGGCACCGACCGTTCGACGCTCGAAATTCCCTCGACCGGCGACGACCATCTGGCCCGCATGGCGCAGATTCTCGGCGCAG
ACTTCAAGGATAACGCCATCGAAATCGACGCCGGGCGCGAGGATGTGACGCTGACCGGTTTTGCTGGCGTTCCCACGTTC
AATCGCGGAAATTCGGCGCATCAATATGTCTTCGTCAATGGCCGCCCTGTGCAGGACAAGCTGCTTTTATCGGCCATTCG
CGGCGCCTATGCCGAAACCGTGCCGCATGGGCGATATCCGGTCGCGGTGCTGTCCATCACGCTCGACCCCGCCTTTGTGG
ATGTGAATGTGCATCCGGCCAAATCCGACGTACGTTTCCGCGATCCCGGCCTCATTCGCGGGCTGATCGTCGGGGCGATC
CGTCAGGCGCTGACGCGTGACGGCGACAGGGCGGCAACGACGGGCACCAGCCAGATGATGAACGCCTTCCGCCCCGGCTA
CAGCCCGTCCGGCCTGCGGCCCTCGCCTTCCATGATGGCTTCCGCACCATGGTCCGCCACGACCTCCCCGTCGCGACCGC
TCGCCGTTTCCGGGGACATGCAATTTGCCGAAGCGGTGCAGTCTCGCTTTTCCGACATAACCATGCCGACGGCGCGGGCG
GAACCACGCGAGGCTTACGAGGCTTCCCCTGGCCCTTCGCCGGAGCCGTTGCTTTATCCACTTGGAGCGGCACGGGCGCA
GCTGCACGAGAACTACATCATCGCGCAGACGGAAAACGGCCTTGTCATCGTCGACCAGCATGCCGCGCATGAGCGGCTGG
TGTTTGAGGAAATGCGCAACGCCCTGCATTCAAGGCGGCCGCCCTCGCAGGTGCTGCTCATCCCTGAAATCATCGATCTG
CCCGAGGAAGATTGCGACCGGCTGATGGATCACGCGGCCGGTTTCGATGCGCTGGGGCTCGTCATCGAACGTTTCGGCCC
GGGTGCAATCGCGGTGCGGGAAACGCCGGCCATGCTCGGCGAAGTCAACGTGCAGGGGCTGGTGCGCCAGCTTGCCGACG
AGATCGCCGAATGGGACGCCGCTTCCACGCTTGCGAACAAGCTGGAATATGTCGCCGCGACCATGGCCTGCCACGGCTCG
GTGCGCTCCGGCCGGCGCATGCGGCCGGAGGAGATGAACGCGCTTCTGCGGCAGATGGAAAACACGCCGGGTTCAGGCCA
ATGCAATCACGGCCGACCGACCTATATCGAACTGAAACTTTCCGATATAGAACGGCTCTTCGGCCGCAGCTGA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(24-122)

MutL C terminal dimerisation domain (MutL_C)

(420-566)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(208-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

34.105

100

0.362

Multiple sequence alignment