Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | D7321_RS00040 | Genome accession | NZ_CP032680 |
| Coordinates | 9225..9743 (+) | Length | 172 a.a. |
| NCBI ID | WP_004896330.1 | Uniprot ID | A0A1Y4ICE7 |
| Organism | Lactobacillus johnsonii strain ZLJ010 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4225..14743
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D7321_RS00025 (D7321_00025) | gyrB | 4241..6208 (+) | 1968 | WP_004898283.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| D7321_RS00030 (D7321_00030) | gyrA | 6219..8708 (+) | 2490 | WP_004898285.1 | DNA gyrase subunit A | - |
| D7321_RS00035 (D7321_00035) | rpsF | 8895..9191 (+) | 297 | WP_004896331.1 | 30S ribosomal protein S6 | - |
| D7321_RS00040 (D7321_00040) | ssb | 9225..9743 (+) | 519 | WP_004896330.1 | single-stranded DNA-binding protein | Machinery gene |
| D7321_RS00045 (D7321_00045) | rpsR | 9768..10004 (+) | 237 | WP_003649728.1 | 30S ribosomal protein S18 | - |
| D7321_RS00050 (D7321_00050) | - | 10098..11015 (+) | 918 | WP_011161252.1 | magnesium transporter CorA family protein | - |
| D7321_RS00055 (D7321_00055) | - | 11123..13141 (+) | 2019 | WP_127835420.1 | DHH family phosphoesterase | - |
| D7321_RS00060 (D7321_00060) | rplI | 13153..13608 (+) | 456 | WP_003651632.1 | 50S ribosomal protein L9 | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18600.32 Da Isoelectric Point: 4.7531
>NTDB_id=318149 D7321_RS00040 WP_004896330.1 9225..9743(+) (ssb) [Lactobacillus johnsonii strain ZLJ010]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFINCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSMNNAPASGESNKPQDPFADSG
STIDISDDDLPF
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFINCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSMNNAPASGESNKPQDPFADSG
STIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=318149 D7321_RS00040 WP_004896330.1 9225..9743(+) (ssb) [Lactobacillus johnsonii strain ZLJ010]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATATACCAATAGTCAAGGTGAACGTGGTGCTGATTTCATCAACTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACTTCAAAGGGTTCATTAGTTGGTATTCAAGGCCGGATTCAAACTAGA
ACGTACGATGATAAGGACGGTAAGAGAGTATACGTGACTGAAGTCATTGTTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAGAATCGTCAGACTAATGGTGGCAATTTTGCTCCCCAAGGAGGAAATGCTCCAAGTACCAATAATTTTGGTG
GATCAAGTGCACCAAGCATGAATAATGCTCCTGCTAGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCCGGT
AGCACAATTGACATCTCAGATGATGATCTCCCATTTTAA
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATATACCAATAGTCAAGGTGAACGTGGTGCTGATTTCATCAACTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACTTCAAAGGGTTCATTAGTTGGTATTCAAGGCCGGATTCAAACTAGA
ACGTACGATGATAAGGACGGTAAGAGAGTATACGTGACTGAAGTCATTGTTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAGAATCGTCAGACTAATGGTGGCAATTTTGCTCCCCAAGGAGGAAATGCTCCAAGTACCAATAATTTTGGTG
GATCAAGTGCACCAAGCATGAATAATGCTCCTGCTAGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCCGGT
AGCACAATTGACATCTCAGATGATGATCTCCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
62.069 |
100 |
0.628 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.568 |
100 |
0.517 |